Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   MRY17_RS15095 Genome accession   NZ_CP094351
Coordinates   3414899..3415534 (-) Length   211 a.a.
NCBI ID   WP_104505301.1    Uniprot ID   A0AAE2U5F9
Organism   Pseudomonas orientalis strain YB-76     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3409899..3420534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRY17_RS15060 (MRY17_15060) - 3410270..3410941 (+) 672 WP_124358863.1 Bax inhibitor-1/YccA family protein -
  MRY17_RS15065 (MRY17_15065) murB 3411013..3412032 (-) 1020 WP_191951872.1 UDP-N-acetylmuramate dehydrogenase -
  MRY17_RS15070 (MRY17_15070) - 3412029..3412493 (-) 465 WP_191951873.1 low molecular weight protein-tyrosine-phosphatase -
  MRY17_RS15075 (MRY17_15075) kdsB 3412493..3413257 (-) 765 WP_191951874.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  MRY17_RS15080 (MRY17_15080) - 3413254..3413439 (-) 186 WP_003174668.1 Trm112 family protein -
  MRY17_RS15085 (MRY17_15085) lpxK 3413464..3414474 (-) 1011 WP_191951875.1 tetraacyldisaccharide 4'-kinase -
  MRY17_RS15090 (MRY17_15090) - 3414474..3414902 (-) 429 WP_181283805.1 biopolymer transporter ExbD -
  MRY17_RS15095 (MRY17_15095) exbB 3414899..3415534 (-) 636 WP_104505301.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  MRY17_RS15100 (MRY17_15100) comA 3415644..3417869 (-) 2226 WP_243352398.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MRY17_RS15105 (MRY17_15105) - 3418005..3418520 (+) 516 WP_124358869.1 DUF2062 domain-containing protein -
  MRY17_RS15110 (MRY17_15110) - 3418524..3419882 (-) 1359 WP_191951877.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22974.11 Da        Isoelectric Point: 6.8768

>NTDB_id=669191 MRY17_RS15095 WP_104505301.1 3414899..3415534(-) (exbB) [Pseudomonas orientalis strain YB-76]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMSTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEDKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=669191 MRY17_RS15095 WP_104505301.1 3414899..3415534(-) (exbB) [Pseudomonas orientalis strain YB-76]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGTTCCATCGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACTCCCGAACACCTGCTGGGGCAAGTCTGGGGCTGGATCAAGAACA
AGCAGCTCGACAAGCAGAAGCTCAAGGAGCTGCGTGCCAATTCTCCATTGGGTGAAATCCTTGCCGCCGGCCTTGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAGGAAGCCGCCGCGCGGGTAATCCATGAGTTGGAGCGCTACAT
CAATGCCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTCGGTTTGCTGGGCACGGTGCTGGGTATGATCGACATTTTCA
GCTCGTTCATGGGCTCGGGCATGAGCACCAACGCCGCCGTGCTGGCCGGTGGCATCTCCAAGGCATTGATCACCACGGCC
GCGGGCCTGATGGTGGGTATCCCTTCGGTGTTCTTCCACCGCTTCCTGCAACGGCGCATCGATGAACTGGTGGTCGGCAT
GGAACAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGTGATGTGGACCTGGTCGAGGACAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853

Multiple sequence alignment