Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MRZ06_RS11130 Genome accession   NZ_CP094348
Coordinates   2111859..2112383 (-) Length   174 a.a.
NCBI ID   WP_243365833.1    Uniprot ID   -
Organism   Macrococcus armenti strain CCM 2609     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2106859..2117383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRZ06_RS11105 (MRZ06_11100) xpt 2108068..2108652 (-) 585 WP_243365829.1 xanthine phosphoribosyltransferase -
  MRZ06_RS11110 (MRZ06_11105) - 2109135..2110109 (+) 975 WP_243365830.1 DUF2382 domain-containing protein -
  MRZ06_RS11115 (MRZ06_11110) - 2110223..2110837 (+) 615 WP_243365831.1 GNAT family N-acetyltransferase -
  MRZ06_RS11120 (MRZ06_11115) - 2110834..2111397 (-) 564 WP_243365832.1 YfbU family protein -
  MRZ06_RS11125 (MRZ06_11120) rpsR 2111588..2111830 (-) 243 WP_224187434.1 30S ribosomal protein S18 -
  MRZ06_RS11130 (MRZ06_11125) ssbA 2111859..2112383 (-) 525 WP_243365833.1 single-stranded DNA-binding protein Machinery gene
  MRZ06_RS11135 (MRZ06_11130) rpsF 2112408..2112698 (-) 291 WP_224184816.1 30S ribosomal protein S6 -
  MRZ06_RS11140 (MRZ06_11135) - 2112835..2113152 (-) 318 WP_243365834.1 hypothetical protein -
  MRZ06_RS11145 (MRZ06_11140) ychF 2113173..2114273 (-) 1101 WP_243365835.1 redox-regulated ATPase YchF -
  MRZ06_RS11150 (MRZ06_11145) - 2114292..2114480 (-) 189 WP_224187438.1 DUF951 domain-containing protein -
  MRZ06_RS11155 (MRZ06_11150) - 2114482..2115369 (-) 888 WP_243365836.1 mechanosensitive ion channel family protein -
  MRZ06_RS11160 (MRZ06_11155) - 2115370..2116233 (-) 864 WP_243365837.1 ParB/RepB/Spo0J family partition protein -
  MRZ06_RS11165 (MRZ06_11160) - 2116226..2116987 (-) 762 WP_224183705.1 AAA family ATPase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19219.78 Da        Isoelectric Point: 4.7065

>NTDB_id=669183 MRZ06_RS11130 WP_243365833.1 2111859..2112383(-) (ssbA) [Macrococcus armenti strain CCM 2609]
MLNRVVLVGRLTKDPEYRVTTSGVSVATFTLAVNRTFTNAQGERQADFINCVVFRKQAENVNNFLHKGSLAGVDGRLQSR
SYDNQEGRRVYVTEVVCDSVQFLEPKNANQSRSNNTSDDYSSYDQGNYDQGSYGQTQGQNYQAANNQPNTSAPSNNPFAN
ATGPVDISDDDLPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=669183 MRZ06_RS11130 WP_243365833.1 2111859..2112383(-) (ssbA) [Macrococcus armenti strain CCM 2609]
TTGCTTAACCGAGTTGTATTAGTTGGTCGTTTAACGAAAGATCCAGAATACAGAGTCACAACATCAGGTGTGTCAGTCGC
TACATTCACTTTAGCAGTAAATCGTACATTTACGAATGCTCAAGGAGAACGTCAAGCTGATTTTATCAACTGTGTCGTAT
TCCGTAAGCAAGCAGAGAATGTTAATAATTTCCTGCATAAAGGTAGCTTAGCTGGGGTTGACGGCAGATTGCAATCCCGT
AGTTATGATAATCAAGAAGGACGCAGAGTATATGTAACTGAAGTTGTTTGTGATTCAGTTCAATTCCTTGAACCGAAAAA
TGCAAATCAATCCCGTTCAAATAACACGTCTGATGACTATTCAAGTTATGACCAAGGTAACTACGATCAAGGAAGTTACG
GTCAAACTCAAGGTCAGAACTATCAAGCAGCAAATAATCAACCAAATACATCAGCACCATCAAACAACCCATTTGCAAAT
GCAACAGGGCCAGTAGATATTAGTGATGATGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.894

100

0.626
  ssb Latilactobacillus sakei subsp. sakei 23K

52.299

100

0.523
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

60.92

0.362

Multiple sequence alignment