Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | MRZ06_RS05230 | Genome accession | NZ_CP094348 |
| Coordinates | 1015388..1015894 (+) | Length | 168 a.a. |
| NCBI ID | WP_243367126.1 | Uniprot ID | - |
| Organism | Macrococcus armenti strain CCM 2609 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1003700..1048074 | 1015388..1015894 | within | 0 |
Gene organization within MGE regions
Location: 1003700..1048074
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MRZ06_RS05130 (MRZ06_05125) | - | 1003700..1004854 (-) | 1155 | WP_243367094.1 | site-specific integrase | - |
| MRZ06_RS05135 (MRZ06_05130) | - | 1004859..1005320 (-) | 462 | WP_243367096.1 | ImmA/IrrE family metallo-endopeptidase | - |
| MRZ06_RS05140 (MRZ06_05135) | - | 1005498..1005701 (+) | 204 | WP_243367098.1 | hypothetical protein | - |
| MRZ06_RS05145 (MRZ06_05140) | - | 1005692..1006558 (-) | 867 | WP_243367100.1 | hypothetical protein | - |
| MRZ06_RS05150 (MRZ06_05145) | - | 1006617..1007243 (-) | 627 | WP_243367102.1 | hypothetical protein | - |
| MRZ06_RS05155 (MRZ06_05150) | - | 1007415..1007756 (-) | 342 | WP_243367104.1 | helix-turn-helix transcriptional regulator | - |
| MRZ06_RS05160 (MRZ06_05155) | - | 1007910..1008161 (+) | 252 | WP_243367106.1 | helix-turn-helix transcriptional regulator | - |
| MRZ06_RS05165 (MRZ06_05160) | - | 1008340..1008780 (+) | 441 | WP_243367108.1 | hypothetical protein | - |
| MRZ06_RS05170 (MRZ06_05165) | - | 1008794..1009039 (+) | 246 | WP_243367110.1 | hypothetical protein | - |
| MRZ06_RS05175 (MRZ06_05170) | - | 1009041..1009232 (+) | 192 | WP_243367112.1 | hypothetical protein | - |
| MRZ06_RS05180 (MRZ06_05175) | - | 1009233..1009445 (+) | 213 | WP_243367114.1 | hypothetical protein | - |
| MRZ06_RS05185 (MRZ06_05180) | - | 1009442..1009663 (-) | 222 | WP_188020099.1 | DUF2188 domain-containing protein | - |
| MRZ06_RS05190 (MRZ06_05185) | - | 1009820..1010581 (+) | 762 | WP_243367116.1 | phage regulatory protein/antirepressor Ant | - |
| MRZ06_RS05195 (MRZ06_05190) | - | 1010971..1011912 (+) | 942 | WP_243367118.1 | lambda-exonuclease family protein | - |
| MRZ06_RS05200 (MRZ06_05195) | recT | 1011918..1012748 (+) | 831 | WP_133418720.1 | recombination protein RecT | - |
| MRZ06_RS05205 (MRZ06_05200) | - | 1012780..1013664 (+) | 885 | WP_243367120.1 | phage replisome organizer N-terminal domain-containing protein | - |
| MRZ06_RS05210 (MRZ06_05205) | - | 1013642..1014427 (+) | 786 | WP_243367122.1 | ATP-binding protein | - |
| MRZ06_RS05215 (MRZ06_05210) | - | 1014454..1015074 (+) | 621 | WP_243367124.1 | hypothetical protein | - |
| MRZ06_RS05220 (MRZ06_05215) | - | 1015067..1015243 (+) | 177 | WP_224186187.1 | hypothetical protein | - |
| MRZ06_RS05225 (MRZ06_05220) | - | 1015215..1015391 (+) | 177 | WP_224186188.1 | hypothetical protein | - |
| MRZ06_RS05230 (MRZ06_05225) | ssbA | 1015388..1015894 (+) | 507 | WP_243367126.1 | single-stranded DNA-binding protein | Machinery gene |
| MRZ06_RS05235 (MRZ06_05230) | - | 1015921..1016199 (+) | 279 | WP_243367128.1 | hypothetical protein | - |
| MRZ06_RS05240 (MRZ06_05235) | - | 1016196..1016417 (+) | 222 | WP_243367130.1 | hypothetical protein | - |
| MRZ06_RS05245 (MRZ06_05240) | - | 1016414..1016593 (+) | 180 | WP_243367132.1 | hypothetical protein | - |
| MRZ06_RS05250 (MRZ06_05245) | - | 1016606..1016998 (+) | 393 | WP_243367134.1 | hypothetical protein | - |
| MRZ06_RS05255 (MRZ06_05250) | - | 1017001..1017228 (+) | 228 | WP_243367136.1 | helix-turn-helix transcriptional regulator | - |
| MRZ06_RS05260 (MRZ06_05255) | - | 1017231..1018472 (+) | 1242 | WP_243367138.1 | DUF3310 domain-containing protein | - |
| MRZ06_RS05265 (MRZ06_05260) | - | 1018469..1018705 (+) | 237 | WP_243367140.1 | hypothetical protein | - |
| MRZ06_RS05270 (MRZ06_05265) | - | 1018718..1018942 (+) | 225 | WP_243367141.1 | hypothetical protein | - |
| MRZ06_RS05275 (MRZ06_05270) | - | 1018955..1019323 (+) | 369 | WP_243367143.1 | YopX family protein | - |
| MRZ06_RS11260 | - | 1019684..1019815 (+) | 132 | WP_279306420.1 | hypothetical protein | - |
| MRZ06_RS05280 (MRZ06_05275) | - | 1019854..1020273 (+) | 420 | WP_243367145.1 | helix-turn-helix transcriptional regulator | - |
| MRZ06_RS05285 (MRZ06_05280) | - | 1020263..1020433 (+) | 171 | WP_243367146.1 | hypothetical protein | - |
| MRZ06_RS05290 (MRZ06_05285) | - | 1020426..1020950 (+) | 525 | WP_243367148.1 | dUTP diphosphatase | - |
| MRZ06_RS05295 (MRZ06_05290) | - | 1020993..1021478 (+) | 486 | WP_243367150.1 | Holliday junction resolvase RecU | - |
| MRZ06_RS05300 (MRZ06_05295) | - | 1021495..1021899 (+) | 405 | WP_243367152.1 | hypothetical protein | - |
| MRZ06_RS05305 (MRZ06_05300) | - | 1021960..1022487 (+) | 528 | WP_243367154.1 | hypothetical protein | - |
| MRZ06_RS05310 (MRZ06_05305) | - | 1022750..1022929 (+) | 180 | WP_243367156.1 | hypothetical protein | - |
| MRZ06_RS05315 (MRZ06_05310) | - | 1023096..1023800 (+) | 705 | WP_243367158.1 | hypothetical protein | - |
| MRZ06_RS05320 (MRZ06_05315) | - | 1023797..1025089 (+) | 1293 | WP_243367160.1 | PBSX family phage terminase large subunit | - |
| MRZ06_RS05325 (MRZ06_05320) | - | 1025101..1026720 (+) | 1620 | WP_243367162.1 | hypothetical protein | - |
| MRZ06_RS05330 (MRZ06_05325) | - | 1026725..1027003 (+) | 279 | WP_243367164.1 | hypothetical protein | - |
| MRZ06_RS05335 (MRZ06_05330) | - | 1027014..1028069 (+) | 1056 | WP_243367166.1 | phage minor capsid protein | - |
| MRZ06_RS05340 (MRZ06_05335) | - | 1028619..1029227 (+) | 609 | WP_243367168.1 | phage scaffolding protein | - |
| MRZ06_RS05345 (MRZ06_05340) | - | 1029240..1029605 (+) | 366 | WP_243367170.1 | hypothetical protein | - |
| MRZ06_RS05350 (MRZ06_05345) | - | 1029629..1030636 (+) | 1008 | WP_243367172.1 | major capsid protein | - |
| MRZ06_RS05355 (MRZ06_05350) | - | 1030677..1030952 (+) | 276 | WP_133418754.1 | hypothetical protein | - |
| MRZ06_RS05360 (MRZ06_05355) | - | 1030970..1031353 (+) | 384 | WP_243367174.1 | hypothetical protein | - |
| MRZ06_RS05365 (MRZ06_05360) | - | 1031365..1031697 (+) | 333 | WP_165981857.1 | hypothetical protein | - |
| MRZ06_RS05370 (MRZ06_05365) | - | 1031687..1032169 (+) | 483 | WP_224186220.1 | HK97 gp10 family phage protein | - |
| MRZ06_RS05375 (MRZ06_05370) | - | 1032174..1032566 (+) | 393 | WP_243367176.1 | minor capsid protein | - |
| MRZ06_RS05380 (MRZ06_05375) | - | 1032620..1033210 (+) | 591 | WP_243367178.1 | hypothetical protein | - |
| MRZ06_RS05385 (MRZ06_05380) | - | 1033288..1033809 (+) | 522 | WP_243367180.1 | hypothetical protein | - |
| MRZ06_RS05390 (MRZ06_05385) | - | 1033764..1034147 (+) | 384 | WP_243367182.1 | hypothetical protein | - |
| MRZ06_RS05395 (MRZ06_05390) | - | 1034187..1039844 (+) | 5658 | WP_243367187.1 | LysM peptidoglycan-binding domain-containing protein | - |
| MRZ06_RS05400 (MRZ06_05395) | - | 1039837..1040271 (+) | 435 | WP_243367189.1 | hypothetical protein | - |
| MRZ06_RS05405 (MRZ06_05400) | - | 1040271..1042064 (+) | 1794 | WP_243367191.1 | phage tail spike protein | - |
| MRZ06_RS05410 (MRZ06_05405) | - | 1042075..1042341 (+) | 267 | WP_243367193.1 | hypothetical protein | - |
| MRZ06_RS05415 (MRZ06_05410) | - | 1042343..1044613 (+) | 2271 | WP_243367195.1 | polysaccharide deacetylase family protein | - |
| MRZ06_RS05420 (MRZ06_05415) | - | 1044706..1045293 (+) | 588 | WP_243367197.1 | hypothetical protein | - |
| MRZ06_RS05425 (MRZ06_05420) | - | 1045366..1045587 (-) | 222 | WP_243367199.1 | hypothetical protein | - |
| MRZ06_RS05430 (MRZ06_05425) | - | 1045589..1045831 (+) | 243 | WP_243367201.1 | hypothetical protein | - |
| MRZ06_RS05435 (MRZ06_05430) | - | 1045818..1046204 (+) | 387 | WP_243367203.1 | hypothetical protein | - |
| MRZ06_RS05440 (MRZ06_05435) | - | 1046250..1046516 (+) | 267 | WP_243367205.1 | phage holin | - |
| MRZ06_RS05445 (MRZ06_05440) | - | 1046519..1047466 (+) | 948 | WP_243367206.1 | SH3 domain-containing protein | - |
| MRZ06_RS05450 (MRZ06_05445) | - | 1047889..1048074 (+) | 186 | WP_243367208.1 | helix-turn-helix transcriptional regulator | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 18799.56 Da Isoelectric Point: 5.1576
>NTDB_id=669165 MRZ06_RS05230 WP_243367126.1 1015388..1015894(+) (ssbA) [Macrococcus armenti strain CCM 2609]
MINRVVLTGRLTKDPEFRVTPSGVSVATFTLAVNRMFTNDQGERQADFINCVTFRKQAENVNNFLSKGSLVGVDGRLQSR
SYDNQQGQRVFVTEVICDSVQFLEPKNSQNQQNNGAQQTNYNQANNNYQNNQNVIRGQNNANNGYAQKQDPFANATGPID
ISDDDLPF
MINRVVLTGRLTKDPEFRVTPSGVSVATFTLAVNRMFTNDQGERQADFINCVTFRKQAENVNNFLSKGSLVGVDGRLQSR
SYDNQQGQRVFVTEVICDSVQFLEPKNSQNQQNNGAQQTNYNQANNNYQNNQNVIRGQNNANNGYAQKQDPFANATGPID
ISDDDLPF
Nucleotide
Download Length: 507 bp
>NTDB_id=669165 MRZ06_RS05230 WP_243367126.1 1015388..1015894(+) (ssbA) [Macrococcus armenti strain CCM 2609]
ATGATTAACAGAGTAGTGCTTACAGGAAGATTAACAAAGGATCCTGAATTCAGAGTAACGCCATCAGGAGTATCAGTTGC
TACATTCACTTTAGCAGTAAACCGCATGTTTACGAATGACCAGGGAGAACGACAAGCAGACTTCATAAATTGTGTAACTT
TTAGAAAACAAGCCGAAAACGTCAACAATTTCTTGAGTAAAGGTAGTCTAGTCGGTGTAGATGGAAGATTACAATCACGC
AGCTATGATAATCAACAAGGACAGCGTGTATTCGTTACAGAAGTGATTTGTGATAGCGTGCAGTTTCTTGAACCAAAGAA
TAGCCAAAATCAACAAAATAACGGCGCACAGCAAACGAATTACAACCAAGCGAACAACAACTATCAAAATAATCAAAACG
TCATCAGAGGTCAAAATAATGCAAATAACGGATATGCGCAGAAGCAAGATCCATTTGCTAATGCAACTGGACCTATTGAT
ATCAGTGATGATGATTTACCGTTCTAA
ATGATTAACAGAGTAGTGCTTACAGGAAGATTAACAAAGGATCCTGAATTCAGAGTAACGCCATCAGGAGTATCAGTTGC
TACATTCACTTTAGCAGTAAACCGCATGTTTACGAATGACCAGGGAGAACGACAAGCAGACTTCATAAATTGTGTAACTT
TTAGAAAACAAGCCGAAAACGTCAACAATTTCTTGAGTAAAGGTAGTCTAGTCGGTGTAGATGGAAGATTACAATCACGC
AGCTATGATAATCAACAAGGACAGCGTGTATTCGTTACAGAAGTGATTTGTGATAGCGTGCAGTTTCTTGAACCAAAGAA
TAGCCAAAATCAACAAAATAACGGCGCACAGCAAACGAATTACAACCAAGCGAACAACAACTATCAAAATAATCAAAACG
TCATCAGAGGTCAAAATAATGCAAATAACGGATATGCGCAGAAGCAAGATCCATTTGCTAATGCAACTGGACCTATTGAT
ATCAGTGATGATGATTTACCGTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
64.205 |
100 |
0.673 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
57.059 |
100 |
0.577 |
| ssb | Glaesserella parasuis strain SC1401 |
36.757 |
100 |
0.405 |