Detailed information NTG0066853

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PBDP_RS25415
• Genome accession: NZ_AP014703
• Coordinates: 5803314..5804660 (+)
• Length: 448 a.a.
• NCBI ID: WP_163856580.1
• Uniprot ID: -
• Organism: Pseudomonas sp. St290
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5798314..5809660

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PBDP_RS25390 (PBDP_5012)	pgeF	5798527..5799252 (-)	726	WP_212801469.1	peptidoglycan editing factor PgeF	-
PBDP_RS25395 (PBDP_5013)	rluD	5799249..5800211 (-)	963	WP_116833478.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
PBDP_RS25400 (PBDP_5014)	-	5800363..5801379 (+)	1017	WP_092204245.1	outer membrane protein assembly factor BamD	-
PBDP_RS25405 (PBDP_5015)	-	5801505..5801738 (+)	234	WP_109756371.1	PP0621 family protein	-
PBDP_RS25410 (PBDP_5016)	pilS	5801728..5803317 (+)	1590	WP_109756372.1	ATP-binding protein	Regulator
PBDP_RS25415 (PBDP_5017)	pilR	5803314..5804660 (+)	1347	WP_163856580.1	sigma-54 dependent transcriptional regulator	Regulator
PBDP_RS25420 (PBDP_5018)	-	5804835..5805200 (-)	366	WP_109756374.1	DUF6124 family protein	-
PBDP_RS25425 (PBDP_5019)	thiO	5805633..5806733 (-)	1101	WP_116833482.1	glycine oxidase ThiO	-
PBDP_RS25430 (PBDP_5020)	-	5806790..5807191 (-)	402	WP_109756376.1	type IV pilin protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50158.55 Da
• Isoelectric Point: 5.9858

>NTDB_id=66853 PBDP_RS25415 WP_163856580.1 5803314..5804660(+) (pilR) [Pseudomonas sp. St290]
MNIRSRQRILIVDDEPDIRELLDITLGRMKLDTRSAKNLAEAQSLLAGDTFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVSSALRLPPVALPASTIERCLLGDSPPMRNVRKQIEKLARSQA
PVYISGESGCGKELVARLIHEQGPRSNQGFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIEPLA
NHMLQRLAANTGSPPAKLHPQALDALRNYRFPGNVRELENMLERAYTLCEQQQIEADDLRLAEGNSTTEAGNPDLMQVDN
LEDYLEDVERKLILQALEQTRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=66853 PBDP_RS25415 WP_163856580.1 5803314..5804660(+) (pilR) [Pseudomonas sp. St290]
TTGAATATTCGCTCACGGCAACGAATCCTGATCGTCGACGACGAACCGGACATCCGCGAACTCCTGGACATTACCCTGGG
CCGGATGAAACTCGACACCCGCAGCGCCAAGAACCTGGCCGAGGCCCAAAGCCTGCTGGCGGGGGATACCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGCACCGGCCTGGAACTGGTGCAGCACATCCAGCAGCGCTACCCGCAACTGCCT
GTGGCGATGATCACTGCCTACGGCAGCCTGGAAACCGCCATCGACGCCCTCAAGGCCGGCGCCTTCGACTTCCTGACCAA
GCCGGTCGACCTGGGTCGGTTGCGGGAGCTGGTCAGCAGCGCCCTGCGCCTGCCGCCGGTCGCTCTTCCGGCAAGCACTA
TCGAGCGTTGCCTGCTGGGTGACTCCCCGCCGATGCGCAATGTGCGCAAACAGATCGAAAAACTCGCTCGCAGCCAGGCA
CCGGTGTACATCAGCGGGGAATCGGGCTGCGGCAAGGAACTGGTCGCCCGGCTGATCCACGAACAGGGGCCCCGTTCAAA
CCAGGGTTTTGTGCCAGTCAACTGTGGGGCGATTCCCACTGAGCTGATGGAAAGCGAGTTTTTTGGCCATCGAAAAGGCA
GCTTCAGCGGCGCCATCGAAGACAAGCCCGGGCTGTTCCAGGCCGCCCACGGCGGGACCTTATTCCTTGATGAAGTGGCC
GACCTGCCCCTGGCTATGCAGGTCAAGCTACTGCGGGCGATCCAGGAAAAGGCCGTGCGCGCTGTTGGCGGCCAACAGGA
AGAAGTGGTGGACGTGCGAATCCTCTGCGCCACCCACAAGGACCTGGATGCCGAAGTCGCCGCCGGGCGCTTTCGCCAGG
ATTTGTATTACCGGCTAAATGTCATCGAACTGCGCGTCCCGCCCTTGCGCGAACGTCGCGAAGACATCGAACCGCTGGCC
AATCACATGCTCCAGCGTCTGGCGGCCAACACCGGTAGTCCACCGGCCAAGTTGCATCCCCAGGCGTTGGACGCTCTCAG
GAATTACCGCTTCCCGGGCAACGTGCGGGAACTGGAGAACATGCTTGAACGTGCCTACACCCTTTGCGAACAGCAACAGA
TCGAAGCCGACGACCTGCGCCTGGCCGAGGGTAATAGTACTACTGAGGCGGGCAATCCCGATTTGATGCAGGTCGACAAC
CTGGAGGATTACCTGGAAGACGTCGAGCGCAAGCTCATCCTCCAGGCCCTGGAGCAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAAGTTGTCGTTTCGGTCGATGCGGTATCGGTTGAAGAAGTTGGGGTTGGATTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

• Response regulator receiver domain (Response_reg) (9-118)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	78.378	99.107	0.777
pilR	Acinetobacter baumannii strain A118	49.455	100	0.507