Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   PBDP_RS25410 Genome accession   NZ_AP014703
Coordinates   5801728..5803317 (+) Length   529 a.a.
NCBI ID   WP_109756372.1    Uniprot ID   -
Organism   Pseudomonas sp. St290     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5796728..5808317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PBDP_RS25390 (PBDP_5012) pgeF 5798527..5799252 (-) 726 WP_212801469.1 peptidoglycan editing factor PgeF -
  PBDP_RS25395 (PBDP_5013) rluD 5799249..5800211 (-) 963 WP_116833478.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PBDP_RS25400 (PBDP_5014) - 5800363..5801379 (+) 1017 WP_092204245.1 outer membrane protein assembly factor BamD -
  PBDP_RS25405 (PBDP_5015) - 5801505..5801738 (+) 234 WP_109756371.1 PP0621 family protein -
  PBDP_RS25410 (PBDP_5016) pilS 5801728..5803317 (+) 1590 WP_109756372.1 ATP-binding protein Regulator
  PBDP_RS25415 (PBDP_5017) pilR 5803314..5804660 (+) 1347 WP_163856580.1 sigma-54 dependent transcriptional regulator Regulator
  PBDP_RS25420 (PBDP_5018) - 5804835..5805200 (-) 366 WP_109756374.1 DUF6124 family protein -
  PBDP_RS25425 (PBDP_5019) thiO 5805633..5806733 (-) 1101 WP_116833482.1 glycine oxidase ThiO -
  PBDP_RS25430 (PBDP_5020) - 5806790..5807191 (-) 402 WP_109756376.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58881.61 Da        Isoelectric Point: 7.0460

>NTDB_id=66852 PBDP_RS25410 WP_109756372.1 5801728..5803317(+) (pilS) [Pseudomonas sp. St290]
MSAETSSPREKQTQRLLRLYHLYRLSIGITLVLLISSKLDNRLLEFANDDLLRSGSWLYLVLNILLVVFLENTRRPARLF
GLALTDVLLLSWLFFAAGGVPSAIGNLLIVSVAIGNTLLRGRVGLLIAAVATIGIVGSTFFLGLSDSNRPSSYLQAGTLG
ALCFAAALLVQGLTRRLEASETLAEQRASEVIGLEALNALILQRMRTGILVLDRERRVQLANESALNLLGMHDLVGQRID
DYSVALVERLQLWLNNPSLRAQSLTISGTGLALQPSFIALGHNEQHQILVFLEDLAQVAQQAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLRESEELNDADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTTPQRLDLRTWLEQFVRQAHESMAEH
QQLHLSIDPGDYTTLMDPDQLTQVLDNLLRNAWRHSAMAHEQAEAWLKLFIDPHSQLSTLDIIDNGPGVTPEQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQI

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=66852 PBDP_RS25410 WP_109756372.1 5801728..5803317(+) (pilS) [Pseudomonas sp. St290]
GTGAGCGCTGAGACCTCAAGCCCGCGCGAAAAACAGACGCAGCGTCTGCTGCGTCTCTATCACCTGTACCGCCTGAGCAT
CGGCATCACCCTGGTGCTGCTGATCTCCAGCAAACTGGACAATCGCCTGCTGGAGTTCGCCAACGACGACCTGCTGCGCA
GCGGCAGTTGGTTGTATCTGGTGCTGAACATCCTGCTTGTAGTGTTCCTTGAAAACACTCGCCGCCCTGCCCGGCTGTTC
GGCCTGGCCCTCACCGACGTACTGCTGCTTTCGTGGCTGTTCTTCGCCGCAGGCGGTGTGCCCAGCGCCATCGGCAACCT
GCTCATCGTCTCGGTAGCCATCGGCAATACGCTATTGCGAGGCCGAGTCGGCCTGTTGATCGCCGCTGTCGCCACGATCG
GTATCGTCGGCTCGACTTTCTTCCTCGGCCTGAGCGACTCGAACCGCCCCAGCAGCTACCTGCAAGCCGGAACCCTGGGG
GCACTGTGCTTCGCCGCCGCCCTGCTGGTACAAGGCCTGACCCGACGGCTGGAAGCCAGCGAAACCCTGGCTGAGCAACG
GGCCAGCGAAGTGATCGGCCTCGAAGCACTCAACGCGCTGATCCTGCAACGCATGCGCACCGGCATCCTGGTGCTGGACC
GCGAACGTCGGGTACAACTGGCCAACGAAAGCGCCTTGAACCTGCTGGGCATGCACGACCTGGTCGGCCAGCGGATCGAT
GACTACTCCGTCGCCCTGGTCGAACGTCTGCAACTGTGGCTGAACAACCCTAGCCTGCGCGCGCAGAGCCTGACCATCAG
CGGCACGGGCCTGGCACTGCAACCGAGCTTCATCGCCCTGGGCCACAACGAGCAACATCAGATCCTGGTCTTCCTCGAAG
ACCTGGCCCAGGTTGCGCAGCAGGCCCAACAACTCAAGCTAGCCTCCCTCGGGCGCCTGACGGCCGGCATCGCCCACGAA
ATCCGCAACCCCCTGGGCGCCATCAGCCACGCGGCGCAATTGCTGCGCGAATCCGAGGAACTGAACGACGCGGATCGGCG
TCTGACGCAGATTATTCAAGATCACTCTCAACGAATGAATCGCGTCATTGAAAACGTCCTGCAACTGTCTCGCCGCCAGC
AAACCACACCCCAACGCCTCGATCTGCGGACCTGGCTCGAACAGTTCGTCCGACAGGCCCACGAAAGCATGGCCGAGCAC
CAGCAATTGCACCTGAGCATCGATCCGGGCGACTACACCACGCTGATGGACCCCGACCAGTTGACCCAGGTACTCGACAA
CCTGCTGCGCAACGCCTGGCGCCACAGCGCAATGGCCCACGAACAGGCCGAGGCCTGGCTGAAACTGTTCATCGATCCCC
ACAGCCAGCTGTCCACACTGGACATCATCGACAACGGCCCCGGCGTGACTCCAGAACAGCAAGCGCACTTGTTCGAGCCC
TTCTTTACCACCAGCAGCCAGGGCACCGGCCTTGGGCTCTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAGATTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.47

99.811

0.594

Multiple sequence alignment