Detailed information NTG0066851

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PBDP_RS25315
• Genome accession: NZ_AP014703
• Coordinates: 5787605..5788474 (+)
• Length: 289 a.a.
• NCBI ID: WP_212801466.1
• Uniprot ID: -
• Organism: Pseudomonas sp. St290
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5782605..5793474

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PBDP_RS25290 (PBDP_4996)	-	5782820..5783116 (+)	297	WP_109756358.1	DUF2845 domain-containing protein	-
PBDP_RS25295 (PBDP_4997)	-	5783428..5783781 (-)	354	WP_109756359.1	BON domain-containing protein	-
PBDP_RS25300 (PBDP_4998)	pilA	5784049..5784459 (-)	411	WP_109756404.1	pilin	Machinery gene
PBDP_RS25305 (PBDP_4999)	pilB	5784683..5786383 (+)	1701	WP_109756360.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PBDP_RS25310 (PBDP_5000)	pilC	5786386..5787603 (+)	1218	WP_109756361.1	type II secretion system F family protein	Machinery gene
PBDP_RS25315 (PBDP_5001)	pilD	5787605..5788474 (+)	870	WP_212801466.1	A24 family peptidase	Machinery gene
PBDP_RS25320 (PBDP_5002)	coaE	5788474..5789097 (+)	624	WP_212801467.1	dephospho-CoA kinase	-
PBDP_RS25325 (PBDP_5003)	yacG	5789094..5789300 (+)	207	WP_109756364.1	DNA gyrase inhibitor YacG	-
PBDP_RS25330 (PBDP_5004)	-	5789297..5789512 (-)	216	WP_013694234.1	hypothetical protein	-
PBDP_RS25335 (PBDP_5005)	-	5789576..5790262 (-)	687	WP_163856590.1	energy-coupling factor ABC transporter permease	-
PBDP_RS25340 (PBDP_5006)	-	5790408..5791034 (+)	627	WP_003205682.1	DUF1780 domain-containing protein	-
PBDP_RS25345 (PBDP_5007)	-	5791031..5791558 (+)	528	WP_116833475.1	MOSC domain-containing protein	-
PBDP_RS25350 (PBDP_5008)	-	5791611..5791784 (+)	174	WP_003185543.1	DUF3094 domain-containing protein	-
PBDP_RS25355 (PBDP_5009)	-	5791845..5793143 (+)	1299	WP_212801468.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31941.08 Da
• Isoelectric Point: 7.7097

>NTDB_id=66851 PBDP_RS25315 WP_212801466.1 5787605..5788474(+) (pilD) [Pseudomonas sp. St290]
MPLSEFFVLYPLAFVLVAALLGLIIGSFLNVLVWRLPKMLDREWRLQAHDLLGLPTETPGPVYNLMLPHSQCPHCGHRIR
AWENIPLLSYLMLRGRCSSCAAPIGRRYPLTELACGALSAFVAWHFGFGWQAAMVMVLSWGLLGMSLIDAEHQLLPDTLV
LPLLWLGLIVNSFGLFVSLNQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVIGVIVLRLRDAPGSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGF

Nucleotide

• Length: 870 bp

>NTDB_id=66851 PBDP_RS25315 WP_212801466.1 5787605..5788474(+) (pilD) [Pseudomonas sp. St290]
ATGCCCCTGAGCGAATTCTTCGTGCTGTATCCCCTGGCTTTCGTGCTCGTTGCGGCACTGCTCGGTCTGATCATCGGCAG
CTTCCTCAACGTGCTGGTGTGGCGCCTGCCAAAGATGCTCGACCGCGAATGGCGCCTGCAAGCCCACGACCTGCTGGGCC
TGCCGACCGAAACCCCGGGGCCGGTCTACAACCTGATGCTGCCCCACTCCCAATGCCCGCACTGCGGCCATCGCATCCGC
GCCTGGGAAAACATTCCGCTGCTCAGCTACCTGATGCTGCGCGGTCGCTGTTCGAGCTGCGCCGCGCCCATCGGCAGGCG
TTACCCCCTGACCGAACTGGCCTGCGGCGCGCTGTCGGCGTTCGTCGCCTGGCATTTCGGCTTTGGCTGGCAAGCGGCGA
TGGTGATGGTGTTGTCCTGGGGCCTGCTGGGCATGAGCCTGATCGACGCCGAACATCAATTGCTGCCCGATACCCTGGTA
TTGCCGTTATTGTGGCTGGGCTTGATCGTCAACAGCTTCGGGCTGTTCGTTTCCTTGAACCAGGCGATGTGGGGCGCGGT
GGCCGGTTATCTGGCGCTGTGGTCGGTGTTCTGGGTGTTCAAGCTGATCACCGGCAAGGAGGGCATGGGCTACGGGGATT
TCAAGCTGCTGGCGATGCTCGGCGCCTGGGGTGGCTGGCAGATCCTGCCGCTTACGTTGCTGTTGTCGTCGCTGGTGGGC
GCCGTTATCGGGGTCATCGTGCTGCGCCTGCGGGATGCCCCAGGGTCGACGCAGATCCCCTTTGGGCCTTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTCTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.817	98.27	0.519
pilD	Vibrio campbellii strain DS40M4	50.526	98.616	0.498
pilD	Neisseria gonorrhoeae MS11	47.387	99.308	0.471
pilD	Acinetobacter baumannii D1279779	48.043	97.232	0.467
pilD	Acinetobacter nosocomialis M2	48.043	97.232	0.467