Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   MOW14_RS01090 Genome accession   NZ_CP094258
Coordinates   232367..233776 (-) Length   469 a.a.
NCBI ID   WP_104470528.1    Uniprot ID   -
Organism   Acinetobacter indicus strain BDT201     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 227367..238776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOW14_RS01075 (MOW14_01075) lptG 228421..229491 (+) 1071 WP_127801557.1 LPS export ABC transporter permease LptG -
  MOW14_RS01080 (MOW14_01080) gpmI 229610..231157 (+) 1548 WP_005181570.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  MOW14_RS01085 (MOW14_01085) - 231181..232350 (+) 1170 WP_005181572.1 S41 family peptidase -
  MOW14_RS01090 (MOW14_01090) pilR 232367..233776 (-) 1410 WP_104470528.1 sigma-54 dependent transcriptional regulator Regulator
  MOW14_RS01095 (MOW14_01095) pilS 233794..235362 (-) 1569 WP_180006911.1 PAS domain-containing sensor histidine kinase Regulator
  MOW14_RS01100 (MOW14_01100) - 235377..236012 (-) 636 WP_005181577.1 response regulator -
  MOW14_RS01105 (MOW14_01105) - 236230..237312 (+) 1083 WP_127799456.1 serine hydrolase -
  MOW14_RS01110 (MOW14_01110) thrC 237405..238550 (-) 1146 WP_005181581.1 threonine synthase -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 52694.69 Da        Isoelectric Point: 6.0895

>NTDB_id=668408 MOW14_RS01090 WP_104470528.1 232367..233776(-) (pilR) [Acinetobacter indicus strain BDT201]
MEQPLVLFVDDEEDLCTLMQMTLARMGIQTHVAHRLEQARQLLSSHHYDACITDLNLPDGNGLQLVELIAQHFPQLPVAV
LTAYGNMEIAIAALKAGAFDFVSKPINQKHLEQLLEKALNQPLFKAHSQEADQLEQRMLIGQSLPIQQLRTTLKKIARSQ
APVFISGESGTGKEVVANLVHRLSNRSDGPFIAINCGAIPGDLMESEFFGHKKGSFTGAAQDKQGLIQSAHGGSLFLDEI
AELPLNMQVKLLRAVQEKRIRPVGSDTEIDVDFRIISASHQDLEALVQQGRFRQDLFFRIHVMDIVLPPLRERGQDILLL
AQHFIQKIAQEWDIHSKTLSERAQQFLLEQYYPGNVRELRNIIERAMTLSDDDVIDLPHLQTAPLRKMAPLAEPEADPAT
PVTADALPAAPRKLPEEGLELFLEKIEKEILLNALNLTHWNRTLAAKKLGMSFRSLRYRLKKFGLDTDE

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=668408 MOW14_RS01090 WP_104470528.1 232367..233776(-) (pilR) [Acinetobacter indicus strain BDT201]
GTGGAACAACCACTCGTTCTCTTCGTCGATGACGAGGAAGATTTATGCACGCTCATGCAAATGACATTGGCGCGCATGGG
GATTCAAACACACGTGGCACACCGGCTGGAGCAAGCACGTCAGCTGCTGTCCAGTCATCACTATGACGCCTGCATCACCG
ATCTGAATTTACCTGATGGCAATGGCCTGCAACTGGTCGAGCTGATTGCCCAGCATTTTCCGCAGCTGCCGGTTGCGGTG
CTGACGGCCTATGGCAATATGGAAATTGCCATTGCCGCACTCAAAGCCGGGGCCTTTGATTTTGTCAGCAAACCGATTAA
CCAGAAACACCTCGAACAATTACTGGAAAAAGCACTGAATCAGCCGCTGTTTAAAGCACATAGTCAGGAAGCAGACCAGC
TGGAACAGCGGATGCTGATCGGGCAATCTCTACCGATTCAGCAACTGCGCACCACCCTGAAAAAAATTGCCCGCTCGCAG
GCACCGGTGTTTATTAGCGGTGAATCAGGCACCGGGAAAGAAGTAGTGGCCAATCTGGTGCATCGCCTCAGCAACCGCAG
TGACGGGCCTTTTATTGCCATCAACTGTGGCGCGATTCCGGGCGATTTGATGGAAAGCGAATTCTTCGGCCATAAAAAAG
GCAGCTTTACCGGTGCAGCGCAGGACAAACAGGGCCTGATTCAGTCAGCACACGGCGGTAGCCTGTTTCTGGATGAAATT
GCCGAACTGCCGCTCAATATGCAGGTAAAACTGCTGCGCGCGGTGCAGGAAAAACGGATTCGTCCGGTCGGTTCCGATAC
GGAAATTGATGTTGATTTCCGGATTATTAGTGCCAGCCATCAGGACCTGGAAGCGTTAGTCCAGCAAGGCCGGTTCCGTC
AGGATCTGTTCTTCCGGATTCATGTAATGGATATTGTGCTGCCACCGCTACGTGAGCGCGGTCAGGATATTTTATTGCTG
GCCCAGCATTTTATTCAGAAAATTGCCCAGGAATGGGATATACACAGCAAAACCCTGTCAGAACGTGCCCAGCAGTTTTT
GCTGGAACAGTATTATCCGGGTAATGTGCGTGAGCTACGCAATATCATTGAACGCGCCATGACCTTGAGTGATGATGATG
TGATTGATCTGCCACATCTGCAGACCGCACCCTTACGCAAAATGGCACCGCTGGCCGAGCCAGAAGCTGACCCGGCAACA
CCGGTTACAGCTGATGCCCTGCCCGCTGCTCCGCGTAAACTGCCGGAAGAAGGACTGGAGCTGTTTCTGGAGAAAATCGA
AAAAGAGATTTTGCTGAATGCACTGAATCTGACCCATTGGAACCGGACCCTGGCTGCGAAAAAACTGGGGATGTCGTTTC
GTTCCCTGCGTTATCGACTAAAGAAATTCGGACTGGATACCGATGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(422-463)

Sigma-54 interaction domain (Sigma54_activat)

(139-305)

Response regulator receiver domain (Response_reg)

(6-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

74.359

99.787

0.742
  pilR Pseudomonas aeruginosa PAK

50.107

99.574

0.499

Multiple sequence alignment