Detailed information NTG0668388

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: OG397_RS27590
• Genome accession: NZ_CP108980
• Coordinates: 6477551..6478837 (+)
• Length: 428 a.a.
• NCBI ID: WP_328555559.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_00728
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 6472551..6483837

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG397_RS27560 (OG397_27540)	-	6473015..6473209 (+)	195	WP_328555556.1	hypothetical protein	-
OG397_RS27575 (OG397_27555)	tig	6474148..6475536 (+)	1389	WP_405917132.1	trigger factor	-
OG397_RS27580 (OG397_27560)	clpP	6475988..6476593 (+)	606	WP_328558268.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG397_RS27585 (OG397_27565)	clpP	6476710..6477390 (+)	681	WP_328555558.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG397_RS27590 (OG397_27570)	clpX	6477551..6478837 (+)	1287	WP_328555559.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG397_RS27595 (OG397_27575)	-	6478924..6479889 (-)	966	WP_328555560.1	hypothetical protein	-
OG397_RS27600 (OG397_27580)	-	6480026..6482677 (+)	2652	WP_405917133.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 46925.80 Da
• Isoelectric Point: 4.8809

>NTDB_id=668388 OG397_RS27590 WP_328555559.1 6477551..6478837(+) (clpX) [Streptomyces sp. NBC_00728]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQES
AKKALSVAVYNHYKRVQAGENSTGQNREDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFSGLEKLIESRAGAKGIGFGATIRSKRELESKDQFAAVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLQAVMYEVPSRKDVARVVIT
ADVVLRNVNPTLIPRDARGRGPGEQKTA

Nucleotide

• Length: 1287 bp

>NTDB_id=668388 OG397_RS27590 WP_328555559.1 6477551..6478837(+) (clpX) [Streptomyces sp. NBC_00728]
GTGGCACGCATCGGTGACGGCGGCGATCTGCTCAAGTGCTCGTTCTGTGGCAAGAGCCAGAAGCAGGTCAAGAAGCTCAT
CGCAGGCCCCGGTGTGTACATCTGCGACGAGTGCATCGATCTCTGCAACGAGATCATCGAGGAAGAACTCGCGGAGACGA
GCGAGGTGCGCTGGGAGGAACTCCCCAAGCCCCGCGAGATCTACGAGTTCCTCGAGGGGTACGTGGTCGGGCAGGAGTCG
GCCAAGAAGGCCCTCTCGGTCGCGGTGTACAACCACTACAAGCGCGTCCAGGCCGGTGAGAACAGCACGGGCCAGAACCG
CGAGGACGCCATCGAGTTGGCGAAGTCCAACATCCTCCTGCTGGGCCCCACGGGCTCCGGCAAGACGCTCCTCGCCCAGA
CCCTCGCGCGCATGCTGAACGTTCCGTTCGCCATCGCCGACGCGACGGCGCTGACGGAGGCGGGGTACGTCGGCGAGGAC
GTCGAGAACATCCTGCTGAAGCTGATCCAGGCCGCCGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCCCGTAAGAGCGAGAACCCGTCGATCACGCGCGATGTGTCCGGCGAGGGTGTGCAGCAGGCGC
TCCTGAAGATCCTCGAGGGCACGACGGCCTCGGTGCCGCCCCAGGGCGGACGCAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTCCTGTTCATCGTGGGCGGCGCCTTCTCCGGTCTGGAGAAGCTCATCGAGTCCCGGGCCGGCGC
GAAGGGCATCGGCTTCGGCGCGACGATCCGCTCGAAGCGGGAGCTGGAGTCCAAGGACCAGTTCGCGGCCGTCATGCCGG
AGGACCTGGTCAAGTTCGGCATGATCCCCGAGTTCATCGGCCGTCTCCCGGTCATCACCTCGGTCCACAACCTGGACCGC
GAGGCGCTCCTCCAGATCCTGGTCGAGCCGCGCAACGCCCTGGTGAAGCAGTACCAGCGCCTCTTCGAACTCGACGGCGT
GGAGCTGGACTTCGAGCGCGAGGCCTTGGAGGCCATCGCCGACCAGGCCATCCTCCGCCAGACCGGCGCCCGTGGCCTGC
GCGCCATCATGGAGGAAGTCCTCCAGGCCGTGATGTACGAGGTCCCGTCCCGCAAGGACGTCGCCCGCGTGGTCATCACC
GCCGACGTGGTCCTGCGCAACGTCAACCCGACCCTGATCCCGCGCGACGCCCGGGGCCGGGGGCCGGGGGAGCAGAAGAC
GGCGTAG

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (115-312)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.035	94.159	0.584
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.015	96.028	0.519