Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   MOW12_RS06645 Genome accession   NZ_CP094254
Coordinates   1389328..1389963 (+) Length   211 a.a.
NCBI ID   WP_104472233.1    Uniprot ID   -
Organism   Acinetobacter indicus strain BDT2076     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1384328..1394963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOW12_RS06610 (MOW12_06610) kdsB 1384686..1385450 (+) 765 WP_104488987.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  MOW12_RS06615 (MOW12_06615) - 1385459..1386442 (+) 984 WP_075166783.1 DNA polymerase III subunit delta' -
  MOW12_RS06620 (MOW12_06620) - 1386454..1386795 (+) 342 WP_005177501.1 PilZ domain-containing protein -
  MOW12_RS06625 (MOW12_06625) - 1386825..1387598 (+) 774 WP_005177502.1 TatD family hydrolase -
  MOW12_RS06630 (MOW12_06630) - 1387658..1388272 (+) 615 WP_016658223.1 TetR/AcrR family transcriptional regulator -
  MOW12_RS06635 (MOW12_06635) - 1388278..1388850 (+) 573 WP_127799398.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  MOW12_RS06640 (MOW12_06640) xcpV 1388960..1389331 (+) 372 WP_227554686.1 type II secretion system protein Machinery gene
  MOW12_RS06645 (MOW12_06645) xcpW 1389328..1389963 (+) 636 WP_104472233.1 type II secretion system minor pseudopilin GspJ Machinery gene
  MOW12_RS06650 (MOW12_06650) gspK 1389984..1390943 (+) 960 WP_171457073.1 type II secretion system minor pseudopilin GspK -
  MOW12_RS06655 (MOW12_06655) - 1391091..1391687 (+) 597 WP_005177512.1 6-carboxytetrahydropterin synthase -
  MOW12_RS06660 (MOW12_06660) ung 1391729..1392442 (+) 714 WP_005177514.1 uracil-DNA glycosylase -
  MOW12_RS06665 (MOW12_06665) - 1392439..1393563 (+) 1125 WP_005177517.1 enoyl-CoA hydratase/isomerase family protein -
  MOW12_RS06670 (MOW12_06670) tadA 1393567..1394088 (+) 522 WP_127799402.1 tRNA adenosine(34) deaminase TadA -
  MOW12_RS06675 (MOW12_06675) - 1394146..1394577 (+) 432 WP_127799404.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24092.39 Da        Isoelectric Point: 6.4849

>NTDB_id=668388 MOW12_RS06645 WP_104472233.1 1389328..1389963(+) (xcpW) [Acinetobacter indicus strain BDT2076]
MIKAKRGFTLVELLVAIAIFAVLSALGWKVFDYLVKVKDRNQWHEQQLEGLQGAYQQILRDSIQIVPLTANINNDIQPAL
VLQNGRFNFSKTGVTDPLQQGIAPTERIEYQYRADEQKLYRLKYANLHQSGQDQPVSSVLLGDVSQFQVSVLNPQELSNW
PDSSIDLNDDQQKRKLPKGIKINLTVQDVQYEWIFSLLNTDFLKSDNKTTS

Nucleotide


Download         Length: 636 bp        

>NTDB_id=668388 MOW12_RS06645 WP_104472233.1 1389328..1389963(+) (xcpW) [Acinetobacter indicus strain BDT2076]
ATGATTAAGGCTAAACGCGGATTTACCCTGGTCGAACTGCTGGTGGCCATTGCCATCTTTGCGGTGCTGTCTGCCTTGGG
TTGGAAAGTATTTGATTATCTGGTCAAGGTCAAAGACCGTAACCAGTGGCATGAACAGCAGTTAGAAGGATTGCAGGGTG
CCTATCAGCAAATTTTACGTGATAGCATTCAGATTGTGCCGCTGACCGCCAACATCAATAATGATATTCAGCCAGCTTTG
GTATTACAAAACGGCCGTTTTAATTTTAGCAAGACCGGTGTGACCGATCCTTTGCAGCAGGGCATTGCCCCCACTGAACG
GATTGAATATCAGTACCGGGCCGACGAACAAAAACTGTATCGTCTGAAATATGCCAATTTGCATCAGTCCGGGCAGGATC
AGCCGGTTTCCAGCGTGTTATTGGGCGATGTTAGCCAATTTCAGGTCAGTGTGCTGAATCCGCAGGAACTGAGTAACTGG
CCAGACAGCAGTATTGACTTAAATGATGATCAACAAAAACGTAAACTGCCAAAAGGCATTAAAATAAATTTAACCGTACA
AGATGTACAATATGAATGGATTTTTAGCCTGTTAAATACCGACTTCCTGAAATCAGACAATAAAACCACATCATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(60-194)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

61.735

92.891

0.573

Multiple sequence alignment