Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG397_RS27585 Genome accession   NZ_CP108980
Coordinates   6476710..6477390 (+) Length   226 a.a.
NCBI ID   WP_328555558.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00728     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6471710..6482390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG397_RS27560 (OG397_27540) - 6473015..6473209 (+) 195 WP_328555556.1 hypothetical protein -
  OG397_RS27575 (OG397_27555) tig 6474148..6475536 (+) 1389 WP_405917132.1 trigger factor -
  OG397_RS27580 (OG397_27560) clpP 6475988..6476593 (+) 606 WP_328558268.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG397_RS27585 (OG397_27565) clpP 6476710..6477390 (+) 681 WP_328555558.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG397_RS27590 (OG397_27570) clpX 6477551..6478837 (+) 1287 WP_328555559.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG397_RS27595 (OG397_27575) - 6478924..6479889 (-) 966 WP_328555560.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24953.39 Da        Isoelectric Point: 4.6288

>NTDB_id=668387 OG397_RS27585 WP_328555558.1 6476710..6477390(+) (clpP) [Streptomyces sp. NBC_00728]
MNDFPGSGLFARTQAEYTGPRAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDVQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEDMLAKHSTTPIEKIREDIERDKILTAEDALAYGLIDQIISTRKMNNSSVV

Nucleotide


Download         Length: 681 bp        

>NTDB_id=668387 OG397_RS27585 WP_328555558.1 6476710..6477390(+) (clpP) [Streptomyces sp. NBC_00728]
GTGAACGACTTCCCCGGCAGCGGCCTCTTCGCCCGCACGCAGGCCGAGTACACCGGTCCTCGCGCGGAGTCCCGCTACGT
CATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTGTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCA
GACCGTGACATCTCGGTCTACATCAACAGCCCCGGTGGCTCGTTCACGGCCCTCACGGCCATTTACGACACGATGCAGTT
CGTGAAGCCGGACGTTCAGACGGTCTGCATGGGTCAGGCCGCCTCGGCCGCCGCGATCCTGCTGGCCGCCGGCACACCGG
GCAAGCGCATGGCACTTCCGAACGCCCGTGTGCTGATCCACCAGCCGTACAGCGAGACCGGCCGCGGGCAGGTCTCGGAC
CTCGAGATCGCGGCGAACGAAATCCTCCGGATGCGCGCGCAGCTGGAAGACATGCTGGCCAAGCACTCGACCACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCCCTCGCGTACGGCCTGATCGACCAGA
TCATTTCCACTCGGAAAATGAACAACTCCTCGGTCGTGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.632

84.071

0.442
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.532

83.186

0.42
  clpP Streptococcus mutans UA159

45.729

88.053

0.403
  clpP Lactococcus lactis subsp. cremoris KW2

45.729

88.053

0.403
  clpP Streptococcus thermophilus LMD-9

46.667

86.283

0.403
  clpP Streptococcus thermophilus LMG 18311

46.667

86.283

0.403
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.724

88.053

0.394
  clpP Streptococcus pyogenes MGAS315

45.641

86.283

0.394
  clpP Streptococcus pyogenes JRS4

45.641

86.283

0.394
  clpP Streptococcus pneumoniae TIGR4

44.898

86.726

0.389
  clpP Streptococcus pneumoniae R6

44.898

86.726

0.389
  clpP Streptococcus pneumoniae Rx1

44.898

86.726

0.389
  clpP Streptococcus pneumoniae D39

44.898

86.726

0.389

Multiple sequence alignment