Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OIC96_RS32720 Genome accession   NZ_CP108938
Coordinates   7351993..7353921 (-) Length   642 a.a.
NCBI ID   WP_330304402.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00775     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 7346993..7358921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIC96_RS32705 (OIC96_32740) - 7347015..7348280 (+) 1266 WP_330304405.1 FAD-dependent oxidoreductase -
  OIC96_RS32710 (OIC96_32745) dnaG 7348327..7350228 (+) 1902 WP_330304404.1 DNA primase -
  OIC96_RS32715 (OIC96_32750) - 7350411..7351763 (+) 1353 WP_330304403.1 RNA polymerase sigma factor -
  OIC96_RS32720 (OIC96_32755) rcrQ 7351993..7353921 (-) 1929 WP_330304402.1 ABC transporter ATP-binding protein Regulator
  OIC96_RS32725 (OIC96_32760) rcrP 7353921..7355654 (-) 1734 WP_330304401.1 ABC transporter ATP-binding protein Regulator
  OIC96_RS32730 (OIC96_32765) - 7355853..7357307 (-) 1455 WP_330304400.1 FGGY family carbohydrate kinase -
  OIC96_RS32735 (OIC96_32770) - 7357500..7357805 (-) 306 WP_330304399.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69405.04 Da        Isoelectric Point: 5.7247

>NTDB_id=668309 OIC96_RS32720 WP_330304402.1 7351993..7353921(-) (rcrQ) [Streptomyces sp. NBC_00775]
MAGPMGRMMAGGGPDQHSMDFKGSGKRLLAQFKPERLTMYGMLCAVVLSVALSVIGPKILGKATDLVFAGIVGRQMPSGA
TKAEVLASMRERGEGSMADMLSGTDFTPGQGIDFGAVGNVLLLALCTFLLAGLLMAVATRLVNRAVNMTVYRMREDLQAK
LSRLPLSYFDKRQRGEVLSRATNDIDNIQQTLQQSMGQLVNSLLTIVGVLVMMFWVSPLLALVALVTVPLSFFVATRVGK
RSQPHFVQQWRTTGKLNAHIEEMYTGHTLVKVFGRQDESAAQFAEQNEKLYEAGFKAQFNSGVMQPLMMFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEADPMPAARPDELRGRVALQ
NVSFRYDPEKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDIAAMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGASRDVTRGEIEEAARAAHADRFIRTLPEGYDTVIDDEGAGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHTELLAAGGAYARLYQAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=668309 OIC96_RS32720 WP_330304402.1 7351993..7353921(-) (rcrQ) [Streptomyces sp. NBC_00775]
ATGGCCGGGCCCATGGGACGCATGATGGCCGGGGGCGGCCCCGATCAGCACTCGATGGATTTCAAGGGGTCCGGCAAACG
GCTCCTCGCCCAGTTCAAGCCCGAGCGCCTCACGATGTACGGCATGCTGTGCGCCGTCGTCCTGAGCGTGGCGCTCTCGG
TGATCGGGCCGAAGATCCTCGGCAAGGCCACCGACCTGGTCTTCGCCGGAATCGTCGGGCGGCAGATGCCGTCCGGCGCC
ACCAAGGCCGAGGTCCTCGCGTCCATGCGCGAGCGCGGCGAGGGCAGCATGGCCGACATGCTCTCGGGGACGGACTTCAC
CCCGGGCCAGGGCATCGACTTCGGCGCCGTCGGAAACGTACTGCTGCTCGCGCTCTGTACGTTCCTGCTGGCCGGCCTGC
TGATGGCGGTGGCGACGCGGCTGGTGAACCGGGCCGTCAACATGACCGTGTACCGCATGCGCGAGGACCTTCAGGCGAAG
CTGTCGCGCCTTCCGCTGTCGTACTTCGACAAGCGGCAGCGCGGTGAGGTGCTCAGCCGCGCGACGAACGACATCGACAA
CATCCAGCAGACGCTGCAGCAGTCGATGGGCCAGCTGGTCAACTCGCTGCTGACCATCGTGGGTGTGCTGGTGATGATGT
TCTGGGTCTCGCCGCTGCTCGCGCTGGTCGCGCTGGTCACGGTCCCGCTCTCCTTCTTCGTCGCCACACGCGTCGGCAAG
CGCTCGCAGCCGCACTTCGTGCAGCAGTGGCGCACCACCGGCAAGCTCAACGCGCACATCGAGGAGATGTACACCGGGCA
CACCCTGGTGAAGGTGTTCGGTCGCCAGGACGAGTCGGCGGCGCAGTTCGCCGAGCAGAACGAGAAGTTGTACGAGGCCG
GGTTCAAGGCACAGTTCAACAGCGGGGTCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTATGTGCTGGTGGCG
GTGGTCGGCGGACTGCGTGTCGCGTCCGGCTCGCTGTCCATCGGTGACGTCCAGGCCTTCATCCAGTACTCCCGGCAGTT
CTCGATGCCGCTGACGCAGGTGGCGTCGATGGCGAATCTGGTGCAGTCGGGTGTCGCGTCGGCGGAGCGGATCTTCGAGC
TGCTGGACGCGGAGGAGCAGGAGGCCGACCCGATGCCGGCGGCCCGTCCCGACGAGCTGCGCGGGCGGGTGGCCCTGCAG
AACGTGTCGTTCCGGTACGACCCCGAGAAGCCGCTGATCGAGGATCTGTCGCTGAAGGTGGAGCCCGGGCACACGGTGGC
GATCGTCGGCCCGACAGGTGCCGGCAAGACGACGCTGGTGAACCTGCTGATGCGGTTCTACGAAGTCACCGGGGGGCGCA
TCACCCTCGACGGCGTCGACATCGCGGCCATGTCCCGGGACGAACTCCGGGCCGGTATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGGGGCACGATCGCCGAGAACATCGCGTACGGCGCCTCGCGGGACGTCACGCGGGGGGAGATCGAGGAGGC
GGCGCGGGCCGCGCACGCGGATCGGTTCATCCGGACGCTGCCGGAGGGCTACGACACCGTGATCGACGACGAGGGGGCGG
GGGTCAGTGCGGGTGAGAAGCAGCTGATCACGATTGCCCGGGCGTTCCTGTCCGATCCGGTGATTCTGGTGCTGGACGAG
GCGACGAGTTCCGTGGACACCCGTACGGAGGTTCTGATCCAGAAGGCGATGGCGAAGCTCGCGCATGGGCGGACCTCGTT
CGTGATCGCGCATCGGCTGTCGACGATTCGGGATGCCGACACGATTCTGGTGATGGAGAACGGGTCGATCGTGGAGCAGG
GCGCGCATACGGAGCTGCTGGCCGCGGGCGGGGCGTACGCGCGCCTGTACCAGGCCCAGTTCGCCCAGGCGGTGGCTGAG
GTGGATTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(43-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.129

96.262

0.386

Multiple sequence alignment