Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   MON40_RS06225 Genome accession   NZ_CP094241
Coordinates   1281926..1282612 (+) Length   228 a.a.
NCBI ID   WP_242926034.1    Uniprot ID   -
Organism   Neisseria macacae ATCC 33926     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1276926..1287612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MON40_RS06210 (MON40_06210) - 1277416..1278070 (-) 655 Protein_1189 IS1595 family transposase -
  MON40_RS06215 (MON40_06215) uvrB 1278158..1280185 (-) 2028 WP_242926033.1 excinuclease ABC subunit UvrB -
  MON40_RS06220 (MON40_06220) dnaB 1280362..1281768 (+) 1407 WP_003778401.1 replicative DNA helicase -
  MON40_RS06225 (MON40_06225) pilH 1281926..1282612 (+) 687 WP_242926034.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  MON40_RS06230 (MON40_06230) pilV 1282626..1283330 (+) 705 WP_050797963.1 type IV pilus modification protein PilV -
  MON40_RS06235 (MON40_06235) - 1283330..1284307 (+) 978 WP_003778408.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  MON40_RS06240 (MON40_06240) pilK 1284286..1284900 (+) 615 WP_003778410.1 pilus assembly protein Machinery gene
  MON40_RS06245 (MON40_06245) pilL 1284913..1285404 (+) 492 WP_003778412.1 PilX family type IV pilin Machinery gene
  MON40_RS06250 (MON40_06250) - 1285571..1287040 (+) 1470 WP_003778414.1 hypothetical protein -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25223.50 Da        Isoelectric Point: 8.7295

>NTDB_id=668307 MON40_RS06225 WP_242926034.1 1281926..1282612(+) (pilH) [Neisseria macacae ATCC 33926]
MYAQQKGFTLIELLVVIAITAIMATIALPNMSEWIASRRAASQAEQVANLLRFARAEAVRLNLPVYVCPVQIRKNGIPDN
KCDTKYNQSGILAYADKSGDVNYNDDRADIFLRTIVLNAKDANKVTYQFDHVKFGGKDSDSQPVFFAFQPNGTFGYSVNK
PSKKTNFTYSDGYIKISMTDSAATTESTKKSRASIVLVDSSGRVEICAKSDSRPLCQYSEPQNSESQN

Nucleotide


Download         Length: 687 bp        

>NTDB_id=668307 MON40_RS06225 WP_242926034.1 1281926..1282612(+) (pilH) [Neisseria macacae ATCC 33926]
ATGTACGCACAACAAAAAGGTTTTACCTTAATCGAATTGTTGGTCGTGATCGCTATTACCGCCATCATGGCCACTATCGC
CCTTCCCAATATGAGCGAATGGATTGCCTCCCGCCGCGCTGCCAGTCAGGCAGAGCAGGTGGCAAACCTCTTGCGTTTCG
CACGAGCCGAAGCAGTCCGCCTCAATCTCCCTGTCTATGTCTGTCCCGTGCAAATCAGAAAAAACGGGATTCCAGATAAT
AAATGTGATACCAAATACAATCAAAGTGGCATCTTGGCCTATGCTGATAAGAGTGGTGATGTTAACTACAATGATGATAG
GGCGGATATTTTCCTGCGCACTATTGTCTTGAACGCTAAGGATGCGAATAAAGTCACCTATCAATTTGACCATGTCAAAT
TCGGTGGCAAAGACTCTGATTCACAGCCTGTTTTCTTCGCATTCCAGCCGAACGGTACTTTTGGCTATTCTGTCAATAAA
CCCAGTAAAAAAACAAATTTTACCTACTCGGACGGCTATATCAAAATCAGCATGACCGATTCCGCCGCAACCACAGAAAG
TACCAAAAAGTCTCGTGCCAGCATTGTGTTGGTCGACAGTAGCGGACGAGTGGAAATCTGCGCCAAGTCAGATTCACGCC
CTCTCTGCCAATATTCTGAACCTCAAAATTCTGAATCACAAAACTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-28)

Type II transport protein GspH (GspH)

(43-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

55.093

94.737

0.522

Multiple sequence alignment