Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   MP387_RS02970 Genome accession   NZ_CP094226
Coordinates   594167..596125 (+) Length   652 a.a.
NCBI ID   WP_242747576.1    Uniprot ID   -
Organism   Streptococcus oralis strain 1648     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 589167..601125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP387_RS02945 (MP387_02945) - 589311..589823 (+) 513 WP_242747570.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -
  MP387_RS02950 (MP387_02950) - 589807..590457 (+) 651 WP_033630026.1 DUF1803 domain-containing protein -
  MP387_RS02955 (MP387_02955) - 590559..590759 (+) 201 WP_000051178.1 CsbD family protein -
  MP387_RS02960 (MP387_02960) - 590791..592236 (-) 1446 WP_242747572.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  MP387_RS02965 (MP387_02965) - 592342..593964 (+) 1623 WP_242747574.1 polysaccharide biosynthesis protein -
  MP387_RS02970 (MP387_02970) amiA 594167..596125 (+) 1959 WP_242747576.1 peptide ABC transporter substrate-binding protein Regulator
  MP387_RS02975 (MP387_02975) - 596271..597365 (+) 1095 WP_000031979.1 cystathionine gamma-synthase -
  MP387_RS02980 (MP387_02980) - 597373..598539 (+) 1167 WP_242747578.1 MalY/PatB family protein -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72803.97 Da        Isoelectric Point: 4.6991

>NTDB_id=668099 MP387_RS02970 WP_242747576.1 594167..596125(+) (amiA) [Streptococcus oralis strain 1648]
MKKSKAKYLTLASVVLSAGILLSACGNSSSATKTYNYVYSNDPSSLNYLAENRATTNDIVTNLVDGLMENDQYGNYVPSL
AEDWTVSQDGLTYTYKLRKDAKWYTYEGEEYAPVTAQDFVTGLKYAADKKSEALYLVQDSVAGLDDYINGKTTDFSTVGV
KAIDDQTVQYTLTRPEPYWNSKTTSTILFPVNADFLKSKGDDFGKVDPSSILYSGPFLMKSFVSKSVIEYKKNPNYWDAK
NVFVDDVKLTYYDGSDQDALARNFVEGVYSYALLYPNSSSFEGIKEKNKDNIIYSMQNATSYYLNFNLDRKSYNFTSKSS
DIEKKSTQEAVLNKNFRQAFNYAYNRTAYGAQSQGEEGATKIIRNLVVPPTFVSINGKDFGDVVSEKMVNYGQEWQGINF
ADAQDPYYNPDKAKAKFAEAKKELEAKGVQFPIHLDVTVDQSAKKGVLEASSLKQSIESVLGAENVVIDIQQLSTDDFDN
SSYLAQTASQKDFDIYNGGWSADYLDPSSYLDILNVNNGGMLQNLGLEPGEVNDKAKAVGLDTYTQMLEEANKEQEPAKR
YEKYAEVQAWLVDSALAIPNVSQGGTPGLRKTVPFSAPFSQAGNKGVESYKYLKLQDKTVTADEYEKAKEKWLKEKEESN
KKAQEELAKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=668099 MP387_RS02970 WP_242747576.1 594167..596125(+) (amiA) [Streptococcus oralis strain 1648]
ATGAAAAAGTCTAAGGCCAAGTATCTGACACTTGCAAGTGTCGTGTTAAGCGCAGGTATCTTACTGAGCGCATGTGGAAA
TTCAAGTAGCGCTACTAAAACATATAACTATGTTTATTCGAACGATCCATCTAGTTTGAACTATCTTGCAGAAAACCGTG
CAACAACCAATGACATCGTGACCAATTTGGTGGATGGGTTGATGGAAAATGACCAATACGGTAACTATGTTCCATCATTG
GCAGAGGATTGGACTGTTTCTCAGGACGGTTTGACCTATACTTACAAATTGCGTAAGGATGCAAAATGGTATACTTATGA
GGGTGAAGAATACGCCCCTGTAACGGCCCAAGACTTTGTGACAGGTTTGAAATATGCTGCTGATAAAAAATCCGAAGCCT
TGTACCTGGTTCAAGACTCTGTAGCAGGTTTGGATGACTATATCAACGGGAAAACAACTGACTTTTCAACAGTCGGTGTT
AAGGCTATTGATGACCAAACAGTTCAGTACACTTTGACACGTCCAGAACCTTATTGGAATTCTAAAACAACTTCAACCAT
TCTCTTCCCTGTCAATGCAGACTTCTTGAAATCAAAAGGGGATGATTTTGGTAAGGTAGATCCTTCTAGCATTTTGTACA
GTGGACCTTTCTTGATGAAATCTTTTGTTTCAAAATCTGTTATCGAATACAAGAAAAATCCAAATTACTGGGATGCTAAA
AATGTCTTTGTGGACGATGTGAAATTGACTTACTATGACGGTAGTGACCAGGATGCCCTAGCTCGTAACTTCGTAGAAGG
AGTATACAGCTACGCACTTCTCTACCCAAATAGCTCAAGCTTTGAAGGCATTAAAGAGAAGAACAAGGATAACATCATCT
ATAGTATGCAAAACGCAACTTCTTATTACTTGAACTTCAACTTGGACAGAAAATCTTATAACTTCACTTCTAAATCCTCA
GATATCGAAAAGAAATCAACCCAAGAAGCAGTTCTGAATAAAAACTTCCGTCAAGCCTTCAACTATGCTTATAACCGTAC
AGCCTATGGAGCACAATCTCAAGGGGAAGAAGGAGCAACAAAGATTATTCGTAACTTGGTTGTACCTCCTACGTTTGTAA
GTATCAACGGAAAAGACTTTGGCGATGTTGTTTCAGAAAAGATGGTCAACTATGGCCAAGAATGGCAAGGAATCAACTTT
GCAGATGCACAAGACCCATACTACAATCCTGATAAAGCTAAGGCTAAATTTGCAGAAGCCAAGAAAGAATTGGAAGCTAA
GGGTGTGCAATTTCCAATCCACTTGGATGTAACAGTTGACCAATCAGCTAAAAAAGGTGTACTTGAAGCAAGCTCTTTGA
AACAATCCATTGAATCTGTTCTAGGAGCTGAGAATGTGGTTATCGATATCCAACAATTATCAACAGATGACTTTGACAAC
TCTAGCTACCTAGCTCAAACCGCATCTCAAAAAGACTTTGATATCTATAATGGCGGTTGGAGTGCTGACTACTTGGACCC
ATCAAGCTATCTTGATATCTTAAATGTCAATAACGGTGGTATGTTGCAAAACCTTGGTCTAGAACCAGGTGAGGTCAATG
ACAAGGCTAAGGCAGTTGGTCTGGATACTTACACTCAAATGTTAGAAGAAGCGAACAAGGAGCAAGAACCAGCAAAACGT
TATGAAAAATATGCTGAAGTTCAAGCCTGGCTCGTTGATAGCGCCCTTGCTATTCCAAATGTTTCCCAAGGTGGAACACC
TGGCTTGAGAAAGACAGTTCCATTCTCAGCGCCATTCTCACAAGCAGGAAATAAGGGTGTCGAATCATACAAGTACCTCA
AGTTGCAAGATAAGACTGTAACGGCTGATGAGTATGAAAAAGCGAAAGAAAAATGGCTAAAAGAAAAAGAAGAATCAAAT
AAAAAAGCCCAAGAAGAACTGGCAAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.775

100

0.563
  amiA3 Streptococcus thermophilus LMG 18311

55.235

100

0.558
  amiA3 Streptococcus thermophilus LMD-9

54.932

100

0.555

Multiple sequence alignment