Detailed information NTG0668032

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG60_RS00730
• Genome accession: NZ_CP094177
• Coordinates: 152657..153622 (+)
• Length: 321 a.a.
• NCBI ID: WP_245084823.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe062
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 147657..158622

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG60_RS00700 (MPG60_00700)	panD	149076..149426 (+)	351	WP_015428297.1	aspartate 1-decarboxylase	-
MPG60_RS00705 (MPG60_00705)	-	149437..149730 (+)	294	WP_154411272.1	YbaB/EbfC family nucleoid-associated protein	-
MPG60_RS00710 (MPG60_00710)	-	149730..150725 (+)	996	WP_245085691.1	PDZ domain-containing protein	-
MPG60_RS00715 (MPG60_00715)	comB6	150733..151788 (+)	1056	WP_057112300.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG60_RS00720 (MPG60_00720)	comB7	151804..151917 (+)	114	WP_073422943.1	comB7 lipoprotein	Machinery gene
MPG60_RS00725 (MPG60_00725)	comB8	151914..152657 (+)	744	WP_180483742.1	virB8 family protein	Machinery gene
MPG60_RS00730 (MPG60_00730)	comB9	152657..153622 (+)	966	WP_245084823.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG60_RS00735 (MPG60_00735)	comB10	153615..154751 (+)	1137	WP_245084826.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG60_RS00740 (MPG60_00740)	-	154821..156233 (+)	1413	WP_245084829.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG60_RS00745 (MPG60_00745)	gmd	156247..157392 (+)	1146	WP_245084831.1	GDP-mannose 4,6-dehydratase	-
MPG60_RS00750 (MPG60_00750)	-	157385..158317 (+)	933	WP_180424432.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 321 a.a.
• Molecular weight: 37086.68 Da
• Isoelectric Point: 9.3412

>NTDB_id=668032 MPG60_RS00730 WP_245084823.1 152657..153622(+) (comB9) [Helicobacter pylori strain Hpfe062]
MRKVLYALVGFLLAFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENALEKAPTNNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKDYRALKSSQRKWYCLWICSKKS
KLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKD
E

Nucleotide

• Length: 966 bp

>NTDB_id=668032 MPG60_RS00730 WP_245084823.1 152657..153622(+) (comB9) [Helicobacter pylori strain Hpfe062]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGAAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAGATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGTTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCACAAAACAAAGAAAATGCCCTTGAAAAGGCCCCCACAAACAACAACAAACCCTT
AAAAGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACGATTGGCGATAACACTAATGCAATGAAAATCGTTAAAA
AGGACATTCAAAAAGACTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTGTGGATTTGTTCTAAAAAATCC
AAACTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTC
TAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCG
CTGAAGATGTCTCGGCTAAATGGACTTTAAGATTAGGCAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGAT
GAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.331	100	0.938