Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OIC43_RS13725 Genome accession   NZ_CP108876
Coordinates   3081301..3082506 (-) Length   401 a.a.
NCBI ID   WP_124716143.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00825     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3076301..3087506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIC43_RS13705 (OIC43_13695) - 3076526..3076864 (-) 339 WP_124716139.1 P-II family nitrogen regulator -
  OIC43_RS13710 (OIC43_13700) - 3076861..3078213 (-) 1353 WP_266688336.1 ammonium transporter -
  OIC43_RS13715 (OIC43_13705) - 3078583..3080055 (-) 1473 WP_124716141.1 hypothetical protein -
  OIC43_RS13720 (OIC43_13710) - 3080481..3081140 (+) 660 WP_266688338.1 bifunctional DNA primase/polymerase -
  OIC43_RS13725 (OIC43_13715) pilA 3081301..3082506 (-) 1206 WP_124716143.1 signal recognition particle-docking protein FtsY Machinery gene
  OIC43_RS13730 (OIC43_13720) - 3082616..3084031 (+) 1416 WP_266688340.1 cytosine permease -
  OIC43_RS13735 (OIC43_13725) - 3084089..3085054 (+) 966 WP_266688342.1 LLM class flavin-dependent oxidoreductase -
  OIC43_RS13740 (OIC43_13730) - 3085079..3086497 (-) 1419 WP_266688343.1 sugar porter family MFS transporter -

Sequence

Protein


Download         Length: 401 a.a.        Molecular weight: 42097.07 Da        Isoelectric Point: 4.4644

>NTDB_id=668030 OIC43_RS13725 WP_124716143.1 3081301..3082506(-) (pilA) [Streptomyces sp. NBC_00825]
MEFVILAVVIALVAVGVISGLVVSSRKKKQLPPAPSSTPTITPPAEPHVGEEAETPREEPRRTIEEVGPPGAPAEEAPEA
VEPEAPAAPALEVPEPTAGRLVRLRARLARSQNSLGKGLLTLLSRDNLDEDTWEEIEDTLLTADVGVAPTQELVERLRER
VRVLGTRTPEGLRALLREELLNLLGTDFDRAVKTESGLDTPGVVMVVGVNGTGKTTTTGKLARVLVADGRSVVLGAADTF
RAAAADQLQTWGERVGARTVRGPEGGDPASIAFDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHGPLDE
VLLVLDATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLVGLGEGPDDLAPFEPEAFVDALIG
D

Nucleotide


Download         Length: 1206 bp        

>NTDB_id=668030 OIC43_RS13725 WP_124716143.1 3081301..3082506(-) (pilA) [Streptomyces sp. NBC_00825]
ATGGAATTCGTCATCCTTGCTGTAGTCATCGCCCTGGTCGCGGTCGGCGTGATCAGCGGGCTCGTGGTCAGCAGCCGCAA
GAAGAAGCAGCTGCCCCCGGCACCGTCGAGCACGCCGACCATCACTCCTCCCGCCGAGCCTCATGTCGGCGAGGAAGCCG
AGACGCCGCGCGAGGAACCGCGCCGCACCATCGAGGAGGTCGGCCCTCCCGGGGCCCCCGCCGAGGAGGCCCCCGAGGCC
GTCGAGCCGGAGGCGCCGGCCGCCCCCGCCCTCGAAGTGCCCGAGCCCACGGCCGGCCGTCTGGTACGGCTGCGCGCCCG
GCTCGCCCGCTCGCAGAACTCCCTCGGCAAGGGGCTGCTCACGCTCCTGTCCCGCGACAACCTCGACGAGGACACCTGGG
AGGAGATCGAGGACACCCTCCTCACCGCCGATGTCGGCGTCGCACCCACCCAGGAACTGGTGGAGCGGCTCCGCGAGCGC
GTCCGCGTGCTCGGCACCCGCACCCCCGAGGGGCTGCGCGCGCTGCTGCGCGAGGAGCTCCTCAACCTGCTCGGCACCGA
CTTCGACCGCGCGGTCAAGACGGAGAGCGGCCTCGACACCCCCGGCGTCGTGATGGTCGTCGGCGTCAACGGAACCGGCA
AGACCACCACCACCGGCAAGCTGGCCCGGGTGCTCGTCGCCGACGGCCGCAGCGTCGTGCTCGGCGCGGCCGACACCTTC
CGGGCGGCCGCCGCCGACCAGCTCCAGACGTGGGGCGAGCGCGTCGGCGCCCGCACCGTGCGCGGGCCCGAGGGCGGCGA
CCCCGCCTCGATCGCCTTCGACGCGGTGAAGGAGGGCATCGCCGAGGGCGCCGATGTGGTCCTCATCGACACCGCCGGAC
GGCTGCACACGAAGACCGGGCTGATGGACGAGCTCGGCAAGGTCAAGCGGGTCGTCGAGAAGCACGGTCCGCTCGACGAG
GTGCTGCTCGTCCTCGACGCCACGACCGGGCAGAACGGTCTGGTCCAGGCCCGGGTGTTCGCCGAGGTCGTGGACATCAC
CGGCATCGTGCTCACCAAGCTGGACGGCACCGCCAAGGGCGGCATCGTCGTCGCCGTCCAGCGCGAGCTGGGCGTGCCGG
TGAAGCTCGTCGGTCTCGGCGAGGGACCGGACGACCTGGCCCCGTTCGAGCCGGAGGCGTTCGTGGACGCCCTGATCGGG
GACTGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(115-180)

SRP54-type protein, GTPase domain (SRP54)

(202-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.848

91.771

0.384

Multiple sequence alignment