Detailed information NTG0667772

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG77_RS02240
• Genome accession: NZ_CP094159
• Coordinates: 483258..484220 (+)
• Length: 320 a.a.
• NCBI ID: WP_245109904.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe0020
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 478258..489220

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG77_RS02210 (MPG77_02210)	panD	479667..480017 (+)	351	WP_000142212.1	aspartate 1-decarboxylase	-
MPG77_RS02215 (MPG77_02215)	-	480028..480321 (+)	294	WP_000347916.1	YbaB/EbfC family nucleoid-associated protein	-
MPG77_RS02220 (MPG77_02220)	-	480321..481316 (+)	996	WP_245110191.1	PDZ domain-containing protein	-
MPG77_RS02225 (MPG77_02225)	comB6	481322..482377 (+)	1056	WP_245110192.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG77_RS02230 (MPG77_02230)	comB7	482393..482518 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
MPG77_RS02235 (MPG77_02235)	comB8	482515..483258 (+)	744	WP_245109903.1	virB8 family protein	Machinery gene
MPG77_RS02240 (MPG77_02240)	comB9	483258..484220 (+)	963	WP_245109904.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG77_RS02245 (MPG77_02245)	comB10	484213..485349 (+)	1137	WP_245109906.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG77_RS02250 (MPG77_02250)	-	485419..486831 (+)	1413	WP_245109907.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG77_RS02255 (MPG77_02255)	gmd	486846..487991 (+)	1146	WP_245109909.1	GDP-mannose 4,6-dehydratase	-
MPG77_RS02260 (MPG77_02260)	-	487984..488916 (+)	933	WP_245109911.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36941.51 Da
• Isoelectric Point: 9.4585

>NTDB_id=667772 MPG77_RS02240 WP_245109904.1 483258..484220(+) (comB9) [Helicobacter pylori strain Hpfe0020]
MRKVLYALVGFLLVFSTLKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILFIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLEKAPTNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRAFKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=667772 MPG77_RS02240 WP_245109904.1 483258..484220(+) (comB9) [Helicobacter pylori strain Hpfe0020]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGTTTTTAGCACTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGAATTTAAACCACCCCATGCAGGATTTAAACGCTATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTATTTTTTTCAAAACCTATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAGAG
TAACGATCGTATTTTGTTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGACAAAAAT
TATTATTCTAACGCTTTTATGAAACCGCAAAACAAAGAAAATACCCTTGAAAAGGCCCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGCTATAGGGCTTTTAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAACAATTCACCTATTTCAAATTTGACAAAAAATTAGCACTCTCTAA
ATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCGCTG
AAGATGTCTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.025	100	0.938