Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG705_RS35380 Genome accession   NZ_CP108857
Coordinates   8249180..8250172 (-) Length   330 a.a.
NCBI ID   WP_242571662.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00838     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 8244180..8255172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG705_RS35355 (OG705_35315) - 8245191..8245385 (+) 195 Protein_6982 FAD-dependent oxidoreductase -
  OG705_RS35360 (OG705_35320) - 8245451..8245624 (+) 174 WP_405825960.1 CsbD family protein -
  OG705_RS35365 (OG705_35325) - 8246082..8246852 (-) 771 WP_405825962.1 class F sortase -
  OG705_RS35370 (OG705_35330) - 8246875..8247741 (-) 867 WP_242571660.1 hypothetical protein -
  OG705_RS35375 (OG705_35335) - 8248266..8248568 (+) 303 WP_242571661.1 DUF4235 domain-containing protein -
  OG705_RS35380 (OG705_35340) cytR 8249180..8250172 (-) 993 WP_242571662.1 LacI family DNA-binding transcriptional regulator Regulator
  OG705_RS35385 (OG705_35345) - 8250502..8252226 (+) 1725 WP_405825965.1 discoidin domain-containing protein -
  OG705_RS35390 (OG705_35350) - 8252384..8253754 (+) 1371 WP_405825967.1 DUF1996 domain-containing protein -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 34987.79 Da        Isoelectric Point: 5.7363

>NTDB_id=667754 OG705_RS35380 WP_242571662.1 8249180..8250172(-) (cytR) [Streptomyces sp. NBC_00838]
MKRPTLEVVAARAGVSKSSVSRVINGEATVAPQIRDVVLRAVEELGYVPNGAARNLVTRRTDTLAVVVSDPPQGVVSDDP
LFSAVVRAVSRELESAGKRLVLMLAESDQSRTRVVEYIAGGHVDGVLLVALHGTDPLPSALARQGLPVVSFNRTSAQDVP
YVALDNAGGAALAVRHLLERGRRRIATITGPLELHESRERLEGYRQTLRDTGRRSIVALGDFTRASGAEGMRQLLEDDPG
LDAVFAANDLMAIGALRTLGQAGRRVPDDVAVVGFDDIEAASYTSPALTSVRSPMADQATAAVHLLLGLIDGESTGPVIM
PNELVVREST

Nucleotide


Download         Length: 993 bp        

>NTDB_id=667754 OG705_RS35380 WP_242571662.1 8249180..8250172(-) (cytR) [Streptomyces sp. NBC_00838]
ATGAAACGCCCCACCCTCGAAGTGGTCGCCGCCCGCGCGGGCGTGTCCAAGTCGAGCGTCTCCCGTGTCATCAACGGAGA
GGCGACGGTCGCCCCGCAGATCCGCGACGTCGTCCTGCGCGCCGTGGAGGAGCTGGGTTACGTGCCCAACGGGGCGGCCC
GCAATCTCGTCACCCGCCGCACGGACACGCTCGCCGTGGTGGTCTCCGACCCGCCGCAGGGGGTTGTCTCCGATGACCCC
CTGTTCTCCGCCGTGGTCCGCGCCGTCAGCAGGGAGCTGGAGTCGGCGGGAAAACGGCTCGTGCTCATGCTCGCGGAATC
GGACCAGAGCCGGACCCGCGTGGTGGAGTACATCGCGGGCGGCCACGTGGACGGTGTGCTCCTGGTCGCCCTGCACGGAA
CGGACCCGCTGCCGTCCGCACTGGCGCGGCAGGGCCTGCCGGTCGTGTCCTTCAACCGCACCTCCGCGCAGGACGTCCCG
TACGTGGCGCTGGACAACGCCGGTGGAGCGGCACTGGCGGTGCGTCACCTCCTGGAACGCGGCCGGCGCCGGATCGCCAC
CATCACCGGGCCACTCGAACTGCACGAGTCACGTGAGCGTCTTGAGGGCTACCGTCAGACGCTGCGTGACACCGGCCGTC
GCTCCATCGTGGCGCTGGGCGACTTCACCCGCGCCTCGGGCGCCGAGGGCATGCGACAGCTCCTGGAGGACGATCCCGGT
CTCGACGCGGTCTTCGCGGCCAACGACCTGATGGCGATCGGCGCCCTGCGCACCCTCGGGCAAGCGGGCCGGCGTGTCCC
CGACGACGTGGCGGTCGTCGGCTTCGACGACATCGAGGCCGCGTCCTACACCAGTCCCGCCCTGACCTCGGTACGCAGCC
CGATGGCCGACCAGGCGACGGCGGCCGTCCATCTGCTCCTCGGCCTGATCGACGGAGAATCCACGGGGCCGGTGATCATG
CCGAACGAGCTCGTGGTGCGCGAATCGACCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(174-330)

Bacterial regulatory proteins, lacI family (LacI)

(5-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.799

100

0.367

Multiple sequence alignment