Detailed information
Bioinformatically predicted
Overview
| Name | comB6 | Type | Machinery gene |
| Locus tag | MPG52_RS00960 | Genome accession | NZ_CP094157 |
| Coordinates | 205166..206221 (+) | Length | 351 a.a. |
| NCBI ID | WP_245077218.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe0021 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 200166..211221
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG52_RS00930 (MPG52_00930) | - | 200566..200979 (+) | 414 | WP_001023005.1 | universal stress protein | - |
| MPG52_RS00935 (MPG52_00935) | - | 201015..201290 (+) | 276 | WP_164539208.1 | ATP-dependent Clp protease adaptor ClpS | - |
| MPG52_RS00940 (MPG52_00940) | - | 201290..203515 (+) | 2226 | WP_245076827.1 | ATP-dependent Clp protease ATP-binding subunit | - |
| MPG52_RS00945 (MPG52_00945) | panD | 203505..203858 (+) | 354 | WP_079357806.1 | aspartate 1-decarboxylase | - |
| MPG52_RS00950 (MPG52_00950) | - | 203861..204163 (+) | 303 | WP_000347928.1 | YbaB/EbfC family nucleoid-associated protein | - |
| MPG52_RS00955 (MPG52_00955) | - | 204163..205158 (+) | 996 | WP_245077217.1 | PDZ domain-containing protein | - |
| MPG52_RS00960 (MPG52_00960) | comB6 | 205166..206221 (+) | 1056 | WP_245077218.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| MPG52_RS00965 (MPG52_00965) | comB7 | 206237..206350 (+) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| MPG52_RS00970 (MPG52_00970) | comB8 | 206347..207090 (+) | 744 | WP_180598095.1 | virB8 family protein | Machinery gene |
| MPG52_RS00975 (MPG52_00975) | comB9 | 207090..208073 (+) | 984 | WP_180598092.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| MPG52_RS00980 (MPG52_00980) | comB10 | 208066..209196 (+) | 1131 | WP_245076829.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| MPG52_RS00985 (MPG52_00985) | - | 209266..210678 (+) | 1413 | WP_245076831.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 351 a.a. Molecular weight: 39794.81 Da Isoelectric Point: 8.3315
>NTDB_id=667752 MPG52_RS00960 WP_245077218.1 205166..206221(+) (comB6) [Helicobacter pylori strain Hpfe0021]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALLEALLFVGFFALFNY
ALKNPLHFYEFFQNAIFIAPNMITQSLSQSLSHFSDHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGALFLAFGFFKTWRSVVVICLKKCFALGFYKPLLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPAPSSVSSSMSESVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALLEALLFVGFFALFNY
ALKNPLHFYEFFQNAIFIAPNMITQSLSQSLSHFSDHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGALFLAFGFFKTWRSVVVICLKKCFALGFYKPLLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPAPSSVSSSMSESVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
Nucleotide
Download Length: 1056 bp
>NTDB_id=667752 MPG52_RS00960 WP_245077218.1 205166..206221(+) (comB6) [Helicobacter pylori strain Hpfe0021]
ATGAAAAATGACGCTTATGAGATTATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGTGCGCTTTTAGAGGCGTTATTATTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCTTTGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACTCAAAGCCT
CTCTCAAAGCTTGAGTCATTTTTCTGACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGTATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCAATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGCGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTATATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTATAAGCCTCTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTA
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTCCCTCTAGCGTTTCTTCTTCTATGAGCGAAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
ATGAAAAATGACGCTTATGAGATTATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGTGCGCTTTTAGAGGCGTTATTATTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCTTTGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACTCAAAGCCT
CTCTCAAAGCTTGAGTCATTTTTCTGACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGTATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCAATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGCGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTATATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTATAAGCCTCTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTA
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTCCCTCTAGCGTTTCTTCTTCTATGAGCGAAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB6 | Helicobacter pylori 26695 |
97.721 |
100 |
0.977 |