Detailed information NTG0667755

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG52_RS00975
• Genome accession: NZ_CP094157
• Coordinates: 207090..208073 (+)
• Length: 327 a.a.
• NCBI ID: WP_180598092.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe0021
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 202090..213073

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG52_RS00945 (MPG52_00945)	panD	203505..203858 (+)	354	WP_079357806.1	aspartate 1-decarboxylase	-
MPG52_RS00950 (MPG52_00950)	-	203861..204163 (+)	303	WP_000347928.1	YbaB/EbfC family nucleoid-associated protein	-
MPG52_RS00955 (MPG52_00955)	-	204163..205158 (+)	996	WP_245077217.1	PDZ domain-containing protein	-
MPG52_RS00960 (MPG52_00960)	comB6	205166..206221 (+)	1056	WP_245077218.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG52_RS00965 (MPG52_00965)	comB7	206237..206350 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
MPG52_RS00970 (MPG52_00970)	comB8	206347..207090 (+)	744	WP_180598095.1	virB8 family protein	Machinery gene
MPG52_RS00975 (MPG52_00975)	comB9	207090..208073 (+)	984	WP_180598092.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG52_RS00980 (MPG52_00980)	comB10	208066..209196 (+)	1131	WP_245076829.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG52_RS00985 (MPG52_00985)	-	209266..210678 (+)	1413	WP_245076831.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG52_RS00990 (MPG52_00990)	gmd	210718..211863 (+)	1146	WP_245076833.1	GDP-mannose 4,6-dehydratase	-
MPG52_RS00995 (MPG52_00995)	-	211856..212788 (+)	933	WP_245076835.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37829.55 Da
• Isoelectric Point: 9.3329

>NTDB_id=667755 MPG52_RS00975 WP_180598092.1 207090..208073(+) (comB9) [Helicobacter pylori strain Hpfe0021]
MRKFLYALMGFLLAFSVLKADDFLEEANETAPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDSEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFLKPQKENKENKENTLENAPTNNKPLKEEKEETKEKEEETIIIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLG
ICSKKSKLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSTKWTLRLGKDYLCIRF
VKKAKDE

Nucleotide

• Length: 984 bp

>NTDB_id=667755 MPG52_RS00975 WP_180598092.1 207090..208073(+) (comB9) [Helicobacter pylori strain Hpfe0021]
ATGCGGAAATTTTTATACGCTCTCATGGGCTTTTTGTTGGCTTTTAGCGTTTTAAAAGCCGATGATTTTTTAGAAGAAGC
GAACGAAACAGCACCGGCGCATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCCAAAATGTCCAACACCTTGAACATTGATTACTTTCAGGGGCAAACTTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGACGCGAAAATTTTAGAAAG
TAACGATCGTATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAGCGAAGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCTAACGCTTTTTTGAAGCCCCAAAAAGAAAATAAAGAAAATAAAGAAAATACCCTTGAAAACGCTCCCACAAA
CAACAAACCCTTAAAGGAAGAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAGACTATAATTATTGGCGATAACACCAACG
CCATGAAAATCGTTAAAAAAGACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGG
ATTTGTTCTAAAAAATCCAAACTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGA
CAAAAAATTAGCGCTCTCTAAATTCCCGGTGATTTATAAGGTCGTTGATGGCTATGATAACCCGGTGAATACAAGGATTG
TGGGCGATTACATTATCGCTGAAGACGTTTCTACTAAATGGACTTTAAGGCTGGGTAAGGACTATTTGTGCATCCGTTTT
GTCAAAAAGGCTAAAGATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-318)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	95.427	100	0.957