Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | MPG52_RS00980 | Genome accession | NZ_CP094157 |
| Coordinates | 208066..209196 (+) | Length | 376 a.a. |
| NCBI ID | WP_245076829.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe0021 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 203066..214196
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG52_RS00945 (MPG52_00945) | panD | 203505..203858 (+) | 354 | WP_079357806.1 | aspartate 1-decarboxylase | - |
| MPG52_RS00950 (MPG52_00950) | - | 203861..204163 (+) | 303 | WP_000347928.1 | YbaB/EbfC family nucleoid-associated protein | - |
| MPG52_RS00955 (MPG52_00955) | - | 204163..205158 (+) | 996 | WP_245077217.1 | PDZ domain-containing protein | - |
| MPG52_RS00960 (MPG52_00960) | comB6 | 205166..206221 (+) | 1056 | WP_245077218.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| MPG52_RS00965 (MPG52_00965) | comB7 | 206237..206350 (+) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| MPG52_RS00970 (MPG52_00970) | comB8 | 206347..207090 (+) | 744 | WP_180598095.1 | virB8 family protein | Machinery gene |
| MPG52_RS00975 (MPG52_00975) | comB9 | 207090..208073 (+) | 984 | WP_180598092.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| MPG52_RS00980 (MPG52_00980) | comB10 | 208066..209196 (+) | 1131 | WP_245076829.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| MPG52_RS00985 (MPG52_00985) | - | 209266..210678 (+) | 1413 | WP_245076831.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| MPG52_RS00990 (MPG52_00990) | gmd | 210718..211863 (+) | 1146 | WP_245076833.1 | GDP-mannose 4,6-dehydratase | - |
| MPG52_RS00995 (MPG52_00995) | - | 211856..212788 (+) | 933 | WP_245076835.1 | GDP-L-fucose synthase | - |
Sequence
Protein
Download Length: 376 a.a. Molecular weight: 41879.42 Da Isoelectric Point: 9.9021
>NTDB_id=667756 MPG52_RS00980 WP_245076829.1 208066..209196(+) (comB10) [Helicobacter pylori strain Hpfe0021]
MNKWLKGAIVFVGGFATITTISLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTLTQSPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFKSPPMDPNTTPPKKDFSSKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKEKD
IATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
MNKWLKGAIVFVGGFATITTISLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTLTQSPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFKSPPMDPNTTPPKKDFSSKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKEKD
IATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
Nucleotide
Download Length: 1131 bp
>NTDB_id=667756 MPG52_RS00980 WP_245076829.1 208066..209196(+) (comB10) [Helicobacter pylori strain Hpfe0021]
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTGTAGGGGGTTTTGCAACGATTACAACCATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAGCCTAGCCTTTTAAATGACGATGAGGTGAAATACCCCTTACAGGATTACACCC
TCACTCAAAGCCCACAGCCAACCAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCCAAAGAAGAAACTTTTAAGAGCCCTCCCATGGATCCAAATAC
AACCCCCCCTAAAAAAGACTTTTCTTCAAAGCAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAAGCCCTA
AAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACTAACCTTAAAGAAAAAGAC
ATTGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCGGATAAAATGATACCCGCCTTTCTCATCACGCCTATTTC
TAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCTGTCTTAATCCCTA
AAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAATAAAATGGGCGAATACCGCCTGGATATCGTATGGAGCCGCATC
ATCACTCCCCATGGGATTAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGTGGGGGA
ATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCCTATTGATTGGGATCA
CTTCAGCTTTAAACAACAGGGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTACCTCTTAATGCAATTGATGAGG
CAAAGCGGCATGGGGATCAACCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGTGATTAG
AGAGGGGAGCAGGGTCTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCTAGAGAGAATGAAGTCATCGCTGAGT
TTTTGAAGTGA
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTGTAGGGGGTTTTGCAACGATTACAACCATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAGCCTAGCCTTTTAAATGACGATGAGGTGAAATACCCCTTACAGGATTACACCC
TCACTCAAAGCCCACAGCCAACCAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCCAAAGAAGAAACTTTTAAGAGCCCTCCCATGGATCCAAATAC
AACCCCCCCTAAAAAAGACTTTTCTTCAAAGCAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAAGCCCTA
AAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACTAACCTTAAAGAAAAAGAC
ATTGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCGGATAAAATGATACCCGCCTTTCTCATCACGCCTATTTC
TAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCTGTCTTAATCCCTA
AAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAATAAAATGGGCGAATACCGCCTGGATATCGTATGGAGCCGCATC
ATCACTCCCCATGGGATTAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGTGGGGGA
ATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCCTATTGATTGGGATCA
CTTCAGCTTTAAACAACAGGGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTACCTCTTAATGCAATTGATGAGG
CAAAGCGGCATGGGGATCAACCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGTGATTAG
AGAGGGGAGCAGGGTCTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCTAGAGAGAATGAAGTCATCGCTGAGT
TTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
97.872 |
100 |
0.979 |