Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   MPG09_RS00715 Genome accession   NZ_CP094150
Coordinates   152204..152941 (+) Length   245 a.a.
NCBI ID   WP_245027259.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe022     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 147204..157941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG09_RS00690 (MPG09_00690) panD 149354..149704 (+) 351 WP_000142213.1 aspartate 1-decarboxylase -
  MPG09_RS00695 (MPG09_00695) - 149715..150008 (+) 294 WP_000347923.1 YbaB/EbfC family nucleoid-associated protein -
  MPG09_RS00700 (MPG09_00700) - 150008..151003 (+) 996 WP_245027753.1 PDZ domain-containing protein -
  MPG09_RS00705 (MPG09_00705) comB6 151011..152066 (+) 1056 WP_245027257.1 P-type conjugative transfer protein TrbL Machinery gene
  MPG09_RS00710 (MPG09_00710) comB7 152082..152207 (+) 126 WP_001217874.1 hypothetical protein Machinery gene
  MPG09_RS00715 (MPG09_00715) comB8 152204..152941 (+) 738 WP_245027259.1 virB8 family protein Machinery gene
  MPG09_RS00720 (MPG09_00720) comB9 152941..153903 (+) 963 WP_245027261.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPG09_RS00725 (MPG09_00725) comB10 153896..155032 (+) 1137 WP_245027263.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG09_RS00730 (MPG09_00730) - 155102..156514 (+) 1413 WP_245027265.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPG09_RS00735 (MPG09_00735) gmd 156528..157673 (+) 1146 WP_245027267.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28485.71 Da        Isoelectric Point: 9.2603

>NTDB_id=667657 MPG09_RS00715 WP_245027259.1 152204..152941(+) (comB8) [Helicobacter pylori strain Hpfe022]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSNSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQGNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
TNRGD

Nucleotide


Download         Length: 738 bp        

>NTDB_id=667657 MPG09_RS00715 WP_245027259.1 152204..152941(+) (comB8) [Helicobacter pylori strain Hpfe022]
ATGAAGGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTCTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTCAGGTTAGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATTGTTTTAATCAGTGTTTTACCCCTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCTATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGCTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGGGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAATTCTAAAGTGTGGCAACGCTTTGAGGATTTGATCAAAACGCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGGCAATAACCCCATTGCGAGCGT
TTCTATTGCAGCTAAACTCATGAATGAAAACAAGTTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCCAAAAACCCTACCGGCTTTAAAGTCACTCGCTACAGCATCACTGAAATC
ACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

95.547

100

0.963

Multiple sequence alignment