Detailed information NTG0667658

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG09_RS00720
• Genome accession: NZ_CP094150
• Coordinates: 152941..153903 (+)
• Length: 320 a.a.
• NCBI ID: WP_245027261.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe022
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 147941..158903

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG09_RS00690 (MPG09_00690)	panD	149354..149704 (+)	351	WP_000142213.1	aspartate 1-decarboxylase	-
MPG09_RS00695 (MPG09_00695)	-	149715..150008 (+)	294	WP_000347923.1	YbaB/EbfC family nucleoid-associated protein	-
MPG09_RS00700 (MPG09_00700)	-	150008..151003 (+)	996	WP_245027753.1	PDZ domain-containing protein	-
MPG09_RS00705 (MPG09_00705)	comB6	151011..152066 (+)	1056	WP_245027257.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG09_RS00710 (MPG09_00710)	comB7	152082..152207 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
MPG09_RS00715 (MPG09_00715)	comB8	152204..152941 (+)	738	WP_245027259.1	virB8 family protein	Machinery gene
MPG09_RS00720 (MPG09_00720)	comB9	152941..153903 (+)	963	WP_245027261.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG09_RS00725 (MPG09_00725)	comB10	153896..155032 (+)	1137	WP_245027263.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG09_RS00730 (MPG09_00730)	-	155102..156514 (+)	1413	WP_245027265.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG09_RS00735 (MPG09_00735)	gmd	156528..157673 (+)	1146	WP_245027267.1	GDP-mannose 4,6-dehydratase	-
MPG09_RS00740 (MPG09_00740)	-	157666..158598 (+)	933	WP_245027269.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36863.44 Da
• Isoelectric Point: 9.4585

>NTDB_id=667658 MPG09_RS00720 WP_245027261.1 152941..153903(+) (comB9) [Helicobacter pylori strain Hpfe022]
MRKVLYALVGFLLVFSALKADDFLEEANETAPTNLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLEKVLTNNKPLKEEKEESKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRSGKDYLCIRFIKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=667658 MPG09_RS00720 WP_245027261.1 152941..153903(+) (comB9) [Helicobacter pylori strain Hpfe022]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGTTTTTAGTGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCCACGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACTTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTATTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGTTTTGATGCGAAAATTTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCTTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATACCCTTGAAAAGGTCCTCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAATCCAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCCAA
ATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTAGGCGATTACATTATCGCTG
AAGATGTCTCGGCTAAATGGACTTTAAGATCGGGTAAGGACTATTTGTGTATTCGTTTTATCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	91.718	100	0.934