Detailed information NTG0667489

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG83_RS00700
• Genome accession: NZ_CP094140
• Coordinates: 149369..150331 (+)
• Length: 320 a.a.
• NCBI ID: WP_245071397.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe035
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 144369..155331

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG83_RS00670 (MPG83_00670)	panD	145778..146128 (+)	351	WP_021306341.1	aspartate 1-decarboxylase	-
MPG83_RS00675 (MPG83_00675)	-	146139..146432 (+)	294	WP_245071395.1	YbaB/EbfC family nucleoid-associated protein	-
MPG83_RS00680 (MPG83_00680)	-	146432..147427 (+)	996	WP_245072124.1	PDZ domain-containing protein	-
MPG83_RS00685 (MPG83_00685)	comB6	147433..148488 (+)	1056	WP_126131604.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG83_RS00690 (MPG83_00690)	comB7	148504..148629 (+)	126	WP_024117273.1	hypothetical protein	Machinery gene
MPG83_RS00695 (MPG83_00695)	comB8	148626..149369 (+)	744	WP_245038526.1	virB8 family protein	Machinery gene
MPG83_RS00700 (MPG83_00700)	comB9	149369..150331 (+)	963	WP_245071397.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG83_RS00705 (MPG83_00705)	comB10	150324..151460 (+)	1137	WP_245071399.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG83_RS00710 (MPG83_00710)	-	151527..152939 (+)	1413	WP_245071401.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG83_RS00715 (MPG83_00715)	gmd	152953..154098 (+)	1146	WP_245071403.1	GDP-mannose 4,6-dehydratase	-
MPG83_RS00720 (MPG83_00720)	-	154091..155023 (+)	933	WP_245071405.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36874.55 Da
• Isoelectric Point: 9.6404

>NTDB_id=667489 MPG83_RS00700 WP_245071397.1 149369..150331(+) (comB9) [Helicobacter pylori strain Hpfe035]
MRKVLYALVGFLLVFSALKADDFLEEANETAPTNLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLEKALTNNKPLKEKKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=667489 MPG83_RS00700 WP_245071397.1 149369..150331(+) (comB9) [Helicobacter pylori strain Hpfe035]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGTTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCCACGAATTTAAACCACCCCATGCAAGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGTGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATACCCTTGAAAAGGCCCTCACAAACAACAAACCCTTAAA
AGAAAAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAACAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCGGTGATCTATAAAGTCGTTGATGGCTATGATAACCCGGTAAATACTAGGATTGTGGGCGATTACATTATCGCTG
AAGATGTCTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATCCGTTTTGTCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	94.479	100	0.963