Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG936_RS17005 Genome accession   NZ_CP108846
Coordinates   3697743..3698378 (+) Length   211 a.a.
NCBI ID   WP_406495695.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00846     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3692743..3703378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG936_RS16990 (OG936_17005) amiE 3694531..3695214 (-) 684 WP_406495691.1 ABC transporter ATP-binding protein Regulator
  OG936_RS16995 (OG936_17010) - 3695211..3696299 (-) 1089 WP_406495692.1 ABC transporter permease -
  OG936_RS17000 (OG936_17015) - 3696538..3697746 (+) 1209 WP_406495693.1 sensor histidine kinase -
  OG936_RS17005 (OG936_17020) vraR 3697743..3698378 (+) 636 WP_406495695.1 response regulator Regulator
  OG936_RS17010 (OG936_17025) - 3698437..3698670 (-) 234 WP_406495696.1 hypothetical protein -
  OG936_RS17020 (OG936_17035) - 3698999..3699547 (+) 549 WP_406495698.1 DNA-binding protein -
  OG936_RS17025 (OG936_17040) - 3699629..3700966 (+) 1338 WP_406495699.1 serine/threonine-protein kinase -
  OG936_RS17030 (OG936_17045) - 3701020..3702456 (-) 1437 WP_406495700.1 hypothetical protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22256.36 Da        Isoelectric Point: 5.0554

>NTDB_id=667486 OG936_RS17005 WP_406495695.1 3697743..3698378(+) (vraR) [Streptomyces sp. NBC_00846]
MTDTPIRLLLADDHPVVRAGLRAVLETEPDFTIVAEAATAEDAVTLAGELDIDVVLMDLQFGRGMNGSQATAAITARPGA
PRVLVVTTYDTDADTLPAIEAGATGYLLKDAPPEELAAAVRTAAAGRTTLAPTVADRLMNRLRTPHTALTRRETEILGLV
ADGLSNQRISDRLSLTQATVKSHLAHIYAKLGVDSRTAAVATATDLGLIRR

Nucleotide


Download         Length: 636 bp        

>NTDB_id=667486 OG936_RS17005 WP_406495695.1 3697743..3698378(+) (vraR) [Streptomyces sp. NBC_00846]
ATGACCGACACCCCCATCCGTCTGCTGCTCGCCGACGACCACCCCGTCGTACGGGCCGGACTGCGCGCCGTACTGGAGAC
CGAACCGGACTTCACGATCGTGGCCGAGGCCGCCACGGCCGAAGACGCGGTCACCCTGGCCGGCGAACTCGACATCGACG
TCGTTCTGATGGACCTGCAGTTCGGCCGGGGCATGAACGGCTCCCAGGCCACCGCCGCCATCACCGCCCGCCCCGGCGCA
CCCCGGGTCCTGGTCGTCACCACCTACGACACCGACGCCGACACACTGCCCGCCATCGAAGCGGGTGCCACCGGTTACCT
CCTGAAGGACGCCCCGCCCGAGGAACTGGCCGCCGCCGTACGGACCGCCGCCGCCGGGCGCACCACCCTCGCCCCCACCG
TCGCCGACCGGCTCATGAACCGCCTGCGCACCCCCCATACCGCCCTGACCCGCCGCGAGACGGAAATCCTCGGTCTGGTC
GCCGACGGCCTGTCCAACCAGCGCATCAGCGACCGGCTCAGCCTCACCCAGGCCACCGTCAAGTCCCACCTGGCCCACAT
CTACGCCAAGCTCGGCGTCGACTCCCGCACCGCCGCCGTCGCCACCGCCACCGACCTCGGCCTCATCCGCCGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(9-120)

Bacterial regulatory proteins, luxR family (GerE)

(148-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.019

98.578

0.365

Multiple sequence alignment