Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   OG936_RS16990 Genome accession   NZ_CP108846
Coordinates   3694531..3695214 (-) Length   227 a.a.
NCBI ID   WP_406495691.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00846     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3689531..3700214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG936_RS16970 (OG936_16985) - 3689607..3690134 (-) 528 WP_406495687.1 peptidylprolyl isomerase -
  OG936_RS16975 (OG936_16990) - 3690635..3691378 (+) 744 WP_406495689.1 DUF5324 family protein -
  OG936_RS16980 (OG936_16995) - 3691583..3692356 (-) 774 WP_406495690.1 IclR family transcriptional regulator -
  OG936_RS16985 (OG936_17000) hutH 3692464..3693999 (+) 1536 WP_266747300.1 histidine ammonia-lyase -
  OG936_RS16990 (OG936_17005) amiE 3694531..3695214 (-) 684 WP_406495691.1 ABC transporter ATP-binding protein Regulator
  OG936_RS16995 (OG936_17010) - 3695211..3696299 (-) 1089 WP_406495692.1 ABC transporter permease -
  OG936_RS17000 (OG936_17015) - 3696538..3697746 (+) 1209 WP_406495693.1 sensor histidine kinase -
  OG936_RS17005 (OG936_17020) vraR 3697743..3698378 (+) 636 WP_406495695.1 response regulator Regulator
  OG936_RS17010 (OG936_17025) - 3698437..3698670 (-) 234 WP_406495696.1 hypothetical protein -
  OG936_RS17020 (OG936_17035) - 3698999..3699547 (+) 549 WP_406495698.1 DNA-binding protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 23969.41 Da        Isoelectric Point: 7.5753

>NTDB_id=667485 OG936_RS16990 WP_406495691.1 3694531..3695214(-) (amiE) [Streptomyces sp. NBC_00846]
MSLNLTDITLTYPDGESRLTALDRVGLDVPKGSLTAVVGPSGSGKSSLLAVAATLITPEAGTVTIDGVSTTGMTRGELTA
LRRHKIGIVFQQPNLLPSLTAAEQLQVMAGIDGRSPSRARPRAMELLDAVGLADQAGRRPHQLSGGQRQRINIARALMND
PTVLLVDEPTSALDHERGAAVIDLITRLTHQKATATVLVTHDRAHLTAVDQIAEVHDGRLTLPAPAR

Nucleotide


Download         Length: 684 bp        

>NTDB_id=667485 OG936_RS16990 WP_406495691.1 3694531..3695214(-) (amiE) [Streptomyces sp. NBC_00846]
ATGAGCCTGAACCTGACCGACATCACCCTGACCTACCCCGACGGCGAGAGCCGCCTCACCGCCCTGGACCGGGTCGGCCT
CGACGTCCCCAAGGGCAGCCTCACCGCCGTCGTCGGTCCCTCCGGCTCCGGGAAGTCCAGCCTCCTCGCCGTCGCCGCCA
CCCTCATCACCCCCGAGGCCGGCACCGTCACCATCGACGGTGTGAGCACCACCGGCATGACCCGCGGCGAACTGACGGCC
CTGCGCCGTCACAAGATCGGCATCGTCTTCCAGCAGCCCAACCTGCTGCCCTCCCTCACCGCGGCCGAACAGCTCCAGGT
CATGGCCGGGATCGACGGCCGTTCCCCGTCCAGGGCCCGCCCGCGCGCGATGGAACTGCTGGACGCCGTCGGCCTGGCCG
ACCAGGCGGGCCGGCGTCCCCACCAGCTCTCCGGCGGCCAGCGCCAGCGCATCAACATCGCCCGCGCCCTGATGAACGAC
CCCACCGTCCTCCTGGTCGACGAACCCACCAGCGCCCTGGACCACGAACGCGGTGCCGCCGTCATCGACCTGATCACCCG
GCTCACCCACCAAAAGGCCACCGCCACCGTCCTCGTCACCCACGACCGCGCCCACCTCACCGCCGTCGACCAGATCGCCG
AAGTCCACGACGGACGCCTCACCCTGCCCGCACCCGCCCGCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(22-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

35.043

100

0.361

Multiple sequence alignment