Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MPG53_RS05455 Genome accession   NZ_CP094139
Coordinates   1132337..1133137 (-) Length   266 a.a.
NCBI ID   WP_245060105.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe036     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1127337..1138137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG53_RS05400 (MPG53_05400) - 1128180..1128965 (-) 786 WP_245060092.1 hypothetical protein -
  MPG53_RS05405 (MPG53_05405) - 1128965..1129351 (-) 387 WP_245060093.1 DUF1294 domain-containing protein -
  MPG53_RS05410 (MPG53_05410) - 1129362..1129565 (-) 204 WP_245061312.1 hypothetical protein -
  MPG53_RS05415 (MPG53_05415) - 1129683..1129844 (-) 162 WP_180424435.1 lysozyme -
  MPG53_RS05420 (MPG53_05420) - 1129864..1130073 (-) 210 WP_245060094.1 lysozyme -
  MPG53_RS05425 (MPG53_05425) - 1130027..1130365 (-) 339 WP_245060095.1 lysozyme -
  MPG53_RS05430 (MPG53_05430) - 1130376..1130936 (-) 561 WP_245060096.1 hypothetical protein -
  MPG53_RS05435 (MPG53_05435) - 1130920..1131258 (-) 339 WP_245060099.1 hypothetical protein -
  MPG53_RS05440 (MPG53_05440) - 1131448..1131651 (-) 204 WP_245060102.1 sel1 repeat family protein -
  MPG53_RS05445 (MPG53_05445) - 1131686..1131811 (-) 126 WP_245060103.1 tetratricopeptide repeat protein -
  MPG53_RS05450 (MPG53_05450) dprB 1131936..1132340 (-) 405 WP_000599160.1 Holliday junction resolvase RuvX Machinery gene
  MPG53_RS05455 (MPG53_05455) dprA 1132337..1133137 (-) 801 WP_245060105.1 DNA-processing protein DprA Machinery gene
  MPG53_RS05460 (MPG53_05460) minE 1133149..1133382 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG53_RS05465 (MPG53_05465) minD 1133379..1134185 (-) 807 WP_245060107.1 septum site-determining protein MinD -
  MPG53_RS05470 (MPG53_05470) ilvC 1134204..1135196 (-) 993 WP_245060109.1 ketol-acid reductoisomerase -
  MPG53_RS05480 (MPG53_05480) - 1135445..1136227 (+) 783 WP_245060111.1 NAD+ synthase -
  MPG53_RS05485 (MPG53_05485) - 1136224..1137162 (+) 939 WP_245060113.1 tetraacyldisaccharide 4'-kinase -
  MPG53_RS05490 (MPG53_05490) pseH 1137095..1137637 (-) 543 WP_220998972.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29817.84 Da        Isoelectric Point: 9.1549

>NTDB_id=667476 MPG53_RS05455 WP_245060105.1 1132337..1133137(-) (dprA) [Helicobacter pylori strain Hpfe036]
MKSNFQYSALENIPKAFDILKDPPKKLYCVGDIKLLRAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGV
DIIAQENALPKTIMLSPCSLDLIYPTNNHKVIQEIVQNGLILSEYEKDFMPVKGSFLARNRLVIALSDAVIIPQADLKSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDHHLKEMPEIKDEFLEYCAKNPSYEEAY
LKFGDKLLEYELLGKIKRINHIVVLA

Nucleotide


Download         Length: 801 bp        

>NTDB_id=667476 MPG53_RS05455 WP_245060105.1 1132337..1133137(-) (dprA) [Helicobacter pylori strain Hpfe036]
ATGAAAAGCAACTTCCAATACAGCGCGCTAGAGAATATCCCTAAAGCCTTTGACATTCTCAAAGACCCCCCTAAAAAGCT
CTATTGTGTGGGCGATATAAAGCTTTTGAGAGCACCTTTAAAAGTGGCTATCATCGGCACGAGAAGACCCACTCCTTATA
GCAAGCAACACACCATCACTCTAGCCAGAGAGCTTGCTAAAAATGGCGCGGTTATTGTGAGCGGAGGAGCGTTAGGCGTG
GATATTATCGCTCAAGAAAACGCCTTACCAAAAACCATCATGCTTTCGCCTTGCAGTTTGGATTTGATCTACCCCACGAA
CAACCATAAAGTGATCCAAGAAATCGTGCAAAACGGCTTGATTTTAAGCGAATATGAAAAGGATTTTATGCCCGTTAAAG
GCTCTTTTTTAGCGAGAAACCGCCTGGTGATCGCTTTAAGCGATGCGGTAATTATCCCCCAAGCGGATTTGAAAAGCGGC
TCTATGAGCAGCGCTAGATTAGCCCAAAAGTATCAAAAACCCTTATTTGTTTTGCCCCAACGCCTGAATGAGAGCGATGG
CACTAATGAGCTTTTAGAAAAAGGGCAGGCTCAAGGGATATTTAATATTCAAAATTTTATAAACACCCTTTTAAAAGACC
ACCATTTAAAAGAAATGCCTGAAATCAAAGACGAATTTTTAGAATATTGCGCCAAAAACCCTAGCTATGAAGAGGCGTAT
CTCAAATTTGGGGATAAGCTTTTAGAATACGAGCTTTTGGGCAAGATTAAACGCATCAATCATATCGTGGTGTTAGCGTG
A

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(12-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

95.489

100

0.955
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.673

84.962

0.414

Multiple sequence alignment