Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG936_RS15050 Genome accession   NZ_CP108846
Coordinates   3264827..3266239 (+) Length   470 a.a.
NCBI ID   WP_406495244.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00846     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3259827..3271239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG936_RS15030 (OG936_15040) - 3259853..3260680 (-) 828 WP_383757083.1 sugar phosphate isomerase/epimerase family protein -
  OG936_RS15035 (OG936_15045) - 3260797..3261762 (-) 966 WP_406495240.1 Ppx/GppA family phosphatase -
  OG936_RS15040 (OG936_15050) - 3261803..3262645 (+) 843 WP_384455839.1 hypothetical protein -
  OG936_RS15045 (OG936_15055) - 3262704..3264611 (-) 1908 WP_406495242.1 BACON domain-containing protein -
  OG936_RS15050 (OG936_15060) radA/sms 3264827..3266239 (+) 1413 WP_406495244.1 DNA repair protein RadA Machinery gene
  OG936_RS15055 (OG936_15065) disA 3266320..3267444 (+) 1125 WP_266746940.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG936_RS15060 (OG936_15070) - 3267550..3268356 (-) 807 WP_406495247.1 hypothetical protein -
  OG936_RS15065 (OG936_15075) - 3268530..3269210 (+) 681 WP_406495249.1 phosphatase PAP2 family protein -
  OG936_RS15070 (OG936_15080) - 3269366..3270268 (+) 903 WP_383757097.1 A/G-specific adenine glycosylase -
  OG936_RS15075 (OG936_15085) - 3270437..3271087 (+) 651 WP_406495251.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49409.44 Da        Isoelectric Point: 8.4965

>NTDB_id=667476 OG936_RS15050 WP_406495244.1 3264827..3266239(+) (radA/sms) [Streptomyces sp. NBC_00846]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAALPIGQVDSRQATARSTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASNDHRTLYVTAEESASQVRLRADRIRAINDHLYLAAETDLSAV
LGHLDAVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISSLGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGRVPAGMKVTEVANMGDALSVLPRRSRAQAPQEESARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=667476 OG936_RS15050 WP_406495244.1 3264827..3266239(+) (radA/sms) [Streptomyces sp. NBC_00846]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAATGCGGCTGGACGACCGCCAAGTGGCT
CGGCCGCTGCCCCGAATGCCAGGCATGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCCGCCGTGCGGACCACCGCGGCCG
GCCGGGTCAGCACCGCCGCGCTCCCCATCGGCCAGGTCGACAGCCGGCAGGCCACCGCCCGGTCCACCGGCGTCGGTGAG
CTGGACCGGGTGCTCGGCGGCGGGCTCGTCCCGGGCGCCGTCGTGCTGCTCGCGGGCGAACCGGGCGTCGGGAAGTCGAC
ACTGCTGCTGGACGTCGCCGCCAAGGCGGCGAGCAACGACCACCGCACCCTCTACGTCACCGCCGAGGAGTCCGCGAGCC
AGGTGCGCCTGCGCGCCGACCGGATCCGGGCGATCAACGACCATCTGTATCTCGCCGCCGAGACGGACCTGTCCGCGGTC
CTCGGCCATCTGGACGCCGTCAAGCCGTCGCTCCTCGTCCTCGACTCCGTACAGACCGTCGCCTCGCCCGAGATCGACGG
GGCCCCCGGCGGCATGGCGCAGGTCCGGGAGGTCGCCGGTGCCCTCATCCGGGCCTCCAAGGAGCGCGGCATGTCGACGC
TCCTGGTCGGCCATGTCACCAAGGACGGGGCGATCGCCGGGCCGAGGCTGCTGGAGCATCTCGTCGATGTGGTGCTGTCG
TTCGAGGGCGACCGCCATGCCCGCCTGCGGCTCGTACGCGGCGTCAAGAACAGGTACGGCGCGACCGACGAGGTCGGCTG
TTTCGAGCTGCACGACGAGGGCATCACCGGCCTCGCCGACCCGTCCGGGCTGTTCCTCACCCGGCGCGACGAGCCGGTGC
CCGGCACCTGCCTGACCGTCACCTTGGAAGGCAAGCGACCGCTCGTCGCCGAGGTACAGGCGCTGACCGTCGATTCCCAG
ATCCCTTCACCCCGGCGCACCACCTCGGGGCTGGAGACGTCCCGGGTATCGATGATGCTGGCCGTTCTGGAGCAGCGCGG
CCGGATCAGCTCGCTCGGCAAGCGGGACATCTACAGCGCGACGGTCGGCGGAGTGAAGCTCTCCGAGCCCGCCGCGGACC
TCGCGGTCGCGCTGGCGCTGGCCAGCGCCGCCAGTGACACACCCCTTCCCAAGAACCTGGTGGCGATCGGCGAGGTGGGC
CTCGCGGGCGAGGTCAGACGTGTTACGGGGGTCCAGCGCAGGCTGGCCGAGGCGCACCGCCTGGGCTTCACGCACGCGCT
GGTTCCGACCGATCCGGGAAGGGTCCCGGCCGGTATGAAGGTCACAGAAGTCGCCAACATGGGCGATGCTCTGAGCGTGC
TCCCGCGCCGGTCTCGCGCACAGGCCCCACAGGAGGAGAGCGCACGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(84-223)

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.805

96.17

0.421
  radA Streptococcus mitis SK321

44.056

91.277

0.402
  radA Streptococcus pneumoniae Rx1

44.056

91.277

0.402
  radA Streptococcus pneumoniae D39

44.056

91.277

0.402
  radA Streptococcus pneumoniae R6

44.056

91.277

0.402
  radA Streptococcus pneumoniae TIGR4

44.056

91.277

0.402
  radA Streptococcus mitis NCTC 12261

44.056

91.277

0.402

Multiple sequence alignment