Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG53_RS05450 Genome accession   NZ_CP094139
Coordinates   1131936..1132340 (-) Length   134 a.a.
NCBI ID   WP_000599160.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe036     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1126936..1137340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG53_RS05395 (MPG53_05395) - 1127129..1128190 (-) 1062 WP_245060091.1 hypothetical protein -
  MPG53_RS05400 (MPG53_05400) - 1128180..1128965 (-) 786 WP_245060092.1 hypothetical protein -
  MPG53_RS05405 (MPG53_05405) - 1128965..1129351 (-) 387 WP_245060093.1 DUF1294 domain-containing protein -
  MPG53_RS05410 (MPG53_05410) - 1129362..1129565 (-) 204 WP_245061312.1 hypothetical protein -
  MPG53_RS05415 (MPG53_05415) - 1129683..1129844 (-) 162 WP_180424435.1 lysozyme -
  MPG53_RS05420 (MPG53_05420) - 1129864..1130073 (-) 210 WP_245060094.1 lysozyme -
  MPG53_RS05425 (MPG53_05425) - 1130027..1130365 (-) 339 WP_245060095.1 lysozyme -
  MPG53_RS05430 (MPG53_05430) - 1130376..1130936 (-) 561 WP_245060096.1 hypothetical protein -
  MPG53_RS05435 (MPG53_05435) - 1130920..1131258 (-) 339 WP_245060099.1 hypothetical protein -
  MPG53_RS05440 (MPG53_05440) - 1131448..1131651 (-) 204 WP_245060102.1 sel1 repeat family protein -
  MPG53_RS05445 (MPG53_05445) - 1131686..1131811 (-) 126 WP_245060103.1 tetratricopeptide repeat protein -
  MPG53_RS05450 (MPG53_05450) dprB 1131936..1132340 (-) 405 WP_000599160.1 Holliday junction resolvase RuvX Machinery gene
  MPG53_RS05455 (MPG53_05455) dprA 1132337..1133137 (-) 801 WP_245060105.1 DNA-processing protein DprA Machinery gene
  MPG53_RS05460 (MPG53_05460) minE 1133149..1133382 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG53_RS05465 (MPG53_05465) minD 1133379..1134185 (-) 807 WP_245060107.1 septum site-determining protein MinD -
  MPG53_RS05470 (MPG53_05470) ilvC 1134204..1135196 (-) 993 WP_245060109.1 ketol-acid reductoisomerase -
  MPG53_RS05480 (MPG53_05480) - 1135445..1136227 (+) 783 WP_245060111.1 NAD+ synthase -
  MPG53_RS05485 (MPG53_05485) - 1136224..1137162 (+) 939 WP_245060113.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15265.75 Da        Isoelectric Point: 9.1725

>NTDB_id=667475 MPG53_RS05450 WP_000599160.1 1131936..1132340(-) (dprB) [Helicobacter pylori strain Hpfe036]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKNR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=667475 MPG53_RS05450 WP_000599160.1 1131936..1132340(-) (dprB) [Helicobacter pylori strain Hpfe036]
GTGATTTTGGCATGCGATGTGGGGCTGAAGCGCATTGGGATCGCTGCGCTTTTAAACGGCGTTATTTTGCCTTTAGAAGC
GATCTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAAGTGCTGGTGG
TGGGTAAGCCCAACGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGTGAA
ATCGTTTTTATCAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTGGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTAAAAAATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

97.744

99.254

0.97

Multiple sequence alignment