Detailed information NTG0667405

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPF95_RS00740
• Genome accession: NZ_CP094136
• Coordinates: 156589..157551 (+)
• Length: 320 a.a.
• NCBI ID: WP_245067116.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe039
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 151589..162551

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPF95_RS00710 (MPF95_00710)	panD	153008..153358 (+)	351	WP_245067112.1	aspartate 1-decarboxylase	-
MPF95_RS00715 (MPF95_00715)	-	153369..153662 (+)	294	WP_000347916.1	YbaB/EbfC family nucleoid-associated protein	-
MPF95_RS00720 (MPF95_00720)	-	153662..154657 (+)	996	WP_245067794.1	PDZ domain-containing protein	-
MPF95_RS00725 (MPF95_00725)	comB6	154665..155720 (+)	1056	WP_245067796.1	P-type conjugative transfer protein TrbL	Machinery gene
MPF95_RS00730 (MPF95_00730)	comB7	155736..155849 (+)	114	WP_073422943.1	comB7 lipoprotein	Machinery gene
MPF95_RS00735 (MPF95_00735)	comB8	155846..156589 (+)	744	WP_245067114.1	virB8 family protein	Machinery gene
MPF95_RS00740 (MPF95_00740)	comB9	156589..157551 (+)	963	WP_245067116.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPF95_RS00745 (MPF95_00745)	comB10	157544..158680 (+)	1137	WP_245067118.1	DNA type IV secretion system protein ComB10	Machinery gene
MPF95_RS00750 (MPF95_00750)	-	158750..160162 (+)	1413	WP_245067120.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPF95_RS00755 (MPF95_00755)	gmd	160176..161321 (+)	1146	WP_031214491.1	GDP-mannose 4,6-dehydratase	-
MPF95_RS00760 (MPF95_00760)	-	161314..162246 (+)	933	WP_180521657.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36815.33 Da
• Isoelectric Point: 9.2493

>NTDB_id=667405 MPF95_RS00740 WP_245067116.1 156589..157551(+) (comB9) [Helicobacter pylori strain Hpfe039]
MRKVLCTLVGFLLVFSALKADDFLEEANETVPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLENAPTNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQRGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRSGKDYLCIRFVKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=667405 MPF95_RS00740 WP_245067116.1 156589..157551(+) (comB9) [Helicobacter pylori strain Hpfe039]
ATGCGTAAGGTTTTATGCACTCTTGTGGGTTTTTTGTTGGTTTTTAGTGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGTCCCAGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCTAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTATTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCACAAAACAAAGAAAATACCCTTGAAAATGCCCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACGATTGGCGATAACACTAATGCAATGAAAATCGTTAAAAAGG
ACATTCAAAGAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCCGAAGAAATTTTCAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCCAA
ATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTAGGCGATTACATTATCGCTG
AAGATGTCTCGGCTAAATGGACTTTAAGATCGGGTAAGGACTATTTGTGTATCCGTTTTGTCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.025	100	0.938