Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   MPF95_RS00735 Genome accession   NZ_CP094136
Coordinates   155846..156589 (+) Length   247 a.a.
NCBI ID   WP_245067114.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe039     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 150846..161589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF95_RS00710 (MPF95_00710) panD 153008..153358 (+) 351 WP_245067112.1 aspartate 1-decarboxylase -
  MPF95_RS00715 (MPF95_00715) - 153369..153662 (+) 294 WP_000347916.1 YbaB/EbfC family nucleoid-associated protein -
  MPF95_RS00720 (MPF95_00720) - 153662..154657 (+) 996 WP_245067794.1 PDZ domain-containing protein -
  MPF95_RS00725 (MPF95_00725) comB6 154665..155720 (+) 1056 WP_245067796.1 P-type conjugative transfer protein TrbL Machinery gene
  MPF95_RS00730 (MPF95_00730) comB7 155736..155849 (+) 114 WP_073422943.1 comB7 lipoprotein Machinery gene
  MPF95_RS00735 (MPF95_00735) comB8 155846..156589 (+) 744 WP_245067114.1 virB8 family protein Machinery gene
  MPF95_RS00740 (MPF95_00740) comB9 156589..157551 (+) 963 WP_245067116.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPF95_RS00745 (MPF95_00745) comB10 157544..158680 (+) 1137 WP_245067118.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPF95_RS00750 (MPF95_00750) - 158750..160162 (+) 1413 WP_245067120.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPF95_RS00755 (MPF95_00755) gmd 160176..161321 (+) 1146 WP_031214491.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28726.95 Da        Isoelectric Point: 8.9604

>NTDB_id=667404 MPF95_RS00735 WP_245067114.1 155846..156589(+) (comB8) [Helicobacter pylori strain Hpfe039]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDRSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=667404 MPF95_RS00735 WP_245067114.1 155846..156589(+) (comB8) [Helicobacter pylori strain Hpfe039]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGATTAGAGAGAAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATTGTTTTAATCAGTGTTTTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAAGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAGATCGCGCT
ATGAATTGGTACGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATCAAAACGCAAAACAGCATTTAT
GCACAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCCATTGCAGCTAAACTCATGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACTCGCTACAGCATCACTGAAATC
GCGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.166

100

0.972

Multiple sequence alignment