Detailed information
Bioinformatically predicted
Overview
| Name | comB6 | Type | Machinery gene |
| Locus tag | MPG21_RS00690 | Genome accession | NZ_CP094133 |
| Coordinates | 146580..147635 (+) | Length | 351 a.a. |
| NCBI ID | WP_245026025.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe049 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 141580..152635
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG21_RS00660 (MPG21_00660) | - | 142005..142418 (+) | 414 | WP_001023005.1 | universal stress protein | - |
| MPG21_RS00665 (MPG21_00665) | - | 142438..142713 (+) | 276 | WP_245025455.1 | ATP-dependent Clp protease adaptor ClpS | - |
| MPG21_RS00670 (MPG21_00670) | - | 142713..144935 (+) | 2223 | WP_245025469.1 | ATP-dependent Clp protease ATP-binding subunit | - |
| MPG21_RS00675 (MPG21_00675) | panD | 144925..145275 (+) | 351 | WP_096470438.1 | aspartate 1-decarboxylase | - |
| MPG21_RS00680 (MPG21_00680) | - | 145286..145579 (+) | 294 | WP_000347922.1 | YbaB/EbfC family nucleoid-associated protein | - |
| MPG21_RS00685 (MPG21_00685) | - | 145579..146574 (+) | 996 | WP_245025473.1 | PDZ domain-containing protein | - |
| MPG21_RS00690 (MPG21_00690) | comB6 | 146580..147635 (+) | 1056 | WP_245026025.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| MPG21_RS00695 (MPG21_00695) | comB7 | 147651..147776 (+) | 126 | WP_024117273.1 | hypothetical protein | Machinery gene |
| MPG21_RS00700 (MPG21_00700) | comB8 | 147773..148516 (+) | 744 | WP_000660524.1 | virB8 family protein | Machinery gene |
| MPG21_RS00705 (MPG21_00705) | comB9 | 148516..149478 (+) | 963 | WP_245025477.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| MPG21_RS00710 (MPG21_00710) | comB10 | 149471..150607 (+) | 1137 | WP_245025479.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| MPG21_RS00715 (MPG21_00715) | - | 150677..152089 (+) | 1413 | WP_245025481.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 351 a.a. Molecular weight: 39883.88 Da Isoelectric Point: 8.8165
>NTDB_id=667338 MPG21_RS00690 WP_245026025.1 146580..147635(+) (comB6) [Helicobacter pylori strain Hpfe049]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSVSALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSSVSSSMRESVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSVSALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSSVSSSMRESVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
Nucleotide
Download Length: 1056 bp
>NTDB_id=667338 MPG21_RS00690 WP_245026025.1 146580..147635(+) (comB6) [Helicobacter pylori strain Hpfe049]
ATGAAAAATGACGCTTATGAAATTATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGTGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGTTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTCTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCAATCATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGCTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGATGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATTAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCTAACCTTAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACACCACCCGCTTCTTCTAGCGTTTCTTCTTCTATGAGAGAAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACCCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
ATGAAAAATGACGCTTATGAAATTATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGTGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGTTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTCTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCAATCATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGCTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGATGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATTAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCTAACCTTAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACACCACCCGCTTCTTCTAGCGTTTCTTCTTCTATGAGAGAAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACCCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB6 | Helicobacter pylori 26695 |
98.291 |
100 |
0.983 |