Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG584_RS14575 Genome accession   NZ_CP108826
Coordinates   3390013..3391410 (+) Length   465 a.a.
NCBI ID   WP_405778250.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00859     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3385013..3396410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG584_RS14555 (OG584_14555) - 3385155..3385973 (-) 819 WP_405778246.1 sugar phosphate isomerase/epimerase family protein -
  OG584_RS14560 (OG584_14560) - 3386039..3386971 (-) 933 WP_405778247.1 Ppx/GppA family phosphatase -
  OG584_RS14565 (OG584_14565) - 3387049..3387849 (+) 801 WP_405778248.1 hypothetical protein -
  OG584_RS14570 (OG584_14570) - 3388128..3389840 (-) 1713 WP_405778249.1 BACON domain-containing protein -
  OG584_RS14575 (OG584_14575) radA/sms 3390013..3391410 (+) 1398 WP_405778250.1 DNA repair protein RadA Machinery gene
  OG584_RS14580 (OG584_14580) disA 3391467..3392618 (+) 1152 WP_405778251.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG584_RS14585 (OG584_14585) - 3392907..3393743 (-) 837 WP_405784073.1 hypothetical protein -
  OG584_RS14590 (OG584_14590) - 3393927..3394535 (+) 609 WP_405778252.1 phosphatase PAP2 family protein -
  OG584_RS14595 (OG584_14595) - 3394552..3395478 (+) 927 WP_405778253.1 A/G-specific adenine glycosylase -
  OG584_RS14600 (OG584_14600) - 3395756..3396307 (+) 552 WP_405778254.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 48771.78 Da        Isoelectric Point: 7.7378

>NTDB_id=667340 OG584_RS14575 WP_405778250.1 3390013..3391410(+) (radA/sms) [Streptomyces sp. NBC_00859]
MATRAKTRDRPSYRCTECGYSTAKWLGRCPECQTWGTVEEQGGGPAVRTTAAGPVSSAAVPIGQVDSRTATARSTGVAEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAAGSDHRTLYVTAEESASQVRLRADRIHAINDHLYLAAETDLAAVL
GHLDAVKPSLLVLDSVQTVASPELDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYTATVGGVKLTEPAADLAVALALASAASDVPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPTDPGKVPAGMKVIEVADMGDALRVLPRRSRARAPQDE

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=667340 OG584_RS14575 WP_405778250.1 3390013..3391410(+) (radA/sms) [Streptomyces sp. NBC_00859]
ATGGCCACCCGCGCGAAGACCAGAGACCGGCCGTCCTACCGCTGCACCGAATGCGGGTACTCGACGGCCAAGTGGCTGGG
CCGCTGCCCCGAGTGCCAGACGTGGGGGACGGTCGAGGAGCAGGGCGGCGGACCCGCCGTGCGGACGACCGCAGCCGGTC
CGGTCAGCAGCGCCGCCGTCCCCATCGGGCAGGTCGACAGCCGGACGGCGACAGCGCGTTCGACCGGCGTCGCCGAGCTC
GACCGGGTGCTCGGTGGCGGTCTGGTGCCCGGCGCCGTGGTGCTGCTCGCGGGCGAGCCGGGCGTCGGCAAGTCCACGCT
GCTGCTCGATGTCGCCGCGAAAGCCGCCGGCTCCGACCACCGCACGCTCTATGTGACGGCCGAGGAGTCCGCGAGCCAGG
TCCGGCTGCGTGCCGACCGGATCCACGCGATCAACGACCATCTCTATCTGGCCGCCGAGACGGATCTCGCGGCGGTGCTC
GGCCACCTCGACGCGGTCAAACCGTCCCTGCTGGTCCTGGACTCCGTACAGACCGTGGCGTCGCCCGAGCTGGACGGCGC
GCCGGGCGGTATGGCGCAGGTCCGTGAGGTGGCGGGCGCGTTGATCCGCGCCTCCAAGGAGCGCGGGATGTCCACCCTGC
TCGTCGGGCACGTCACGAAGGACGGCGCCATCGCAGGGCCCCGGCTCCTGGAACATCTGGTGGATGTCGTGCTGTCCTTC
GAGGGCGACCGGCACGCCCGGCTGCGCCTGGTCCGCGGCGTCAAGAACAGGTACGGGGCGACCGACGAGGTCGGCTGCTT
CGAACTGCACGACGAGGGCATCACCGGGCTCGCCGACCCGAGCGGGCTGTTCCTGACGCGCCGTGACGAACCGGTGCCCG
GGACGTGTCTGACGGTCACACTGGAGGGCAAGCGCCCGCTGGTCGCCGAGGTCCAGGCCCTCACGGTCGACTCCCAGATC
CCCTCGCCCCGGCGCACCACGTCCGGTCTGGAGACCTCCCGGGTCTCGATGATGCTCGCCGTCCTGGAGCAGCGCGGCAG
GATCAGCGCGCTCGGCAAGCGGGACATCTACACGGCGACGGTGGGCGGCGTGAAGCTCACCGAACCGGCCGCCGACCTGG
CCGTGGCACTGGCCCTGGCCTCCGCCGCGAGCGACGTCCCGCTCCCGAAGAACCTGGTGGCGATCGGCGAAGTGGGGCTT
GCCGGCGAGGTCAGAAGGGTCACCGGCGTCCAGCGCAGGCTCTCCGAGGCACACCGTCTCGGCTTCACCCACGCCCTCGT
ACCGACCGATCCGGGGAAGGTCCCCGCCGGCATGAAGGTCATCGAAGTGGCGGACATGGGAGACGCGCTGCGGGTCCTTC
CGCGCCGTTCAAGGGCCCGCGCGCCTCAGGACGAGTGA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(13-40)

AAA domain (AAA_25)

(81-222)

Subunit ChlI of Mg-chelatase (ChlI)

(370-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.077

97.849

0.422
  radA Streptococcus mitis SK321

41.814

97.204

0.406
  radA Streptococcus mitis NCTC 12261

41.814

97.204

0.406
  radA Streptococcus pneumoniae TIGR4

41.871

96.559

0.404
  radA Streptococcus pneumoniae R6

41.871

96.559

0.404
  radA Streptococcus pneumoniae Rx1

41.871

96.559

0.404
  radA Streptococcus pneumoniae D39

41.871

96.559

0.404

Multiple sequence alignment