Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG239_RS16460 Genome accession   NZ_CP108814
Coordinates   3379016..3380146 (-) Length   376 a.a.
NCBI ID   WP_328925617.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00868     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3374016..3385146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG239_RS16450 (OG239_16480) rcrP 3375255..3376988 (+) 1734 WP_328925615.1 ABC transporter ATP-binding protein Regulator
  OG239_RS16455 (OG239_16485) rcrQ 3376985..3378907 (+) 1923 WP_405679985.1 ABC transporter ATP-binding protein Regulator
  OG239_RS16460 (OG239_16490) rpoS 3379016..3380146 (-) 1131 WP_328925617.1 RNA polymerase sigma factor Regulator
  OG239_RS16465 (OG239_16495) - 3380287..3382374 (-) 2088 WP_405679984.1 molybdopterin oxidoreductase family protein -
  OG239_RS16470 (OG239_16500) - 3382560..3383330 (-) 771 WP_405679983.1 glucose 1-dehydrogenase -
  OG239_RS16475 (OG239_16505) - 3383398..3384129 (-) 732 WP_405921384.1 vancomycin high temperature exclusion protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41999.03 Da        Isoelectric Point: 5.0014

>NTDB_id=667244 OG239_RS16460 WP_328925617.1 3379016..3380146(-) (rpoS) [Streptomyces sp. NBC_00868]
MSYPTLKCGAPVLGALEVAPVQTRILTVTVNVSESSEPAEAEAVDEEHEEPEVLELIEPVPPQRKRTSADGGAGPSADLF
RQYLREIGRIPLLTAAEEVDLARRVEAGLFAEEKLGSTPDLDSQLALDLDKLVVMGRMAKRRLIESNLRLVVSVAKRYVG
RGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGY
EPTAEEVAAHLELTPERVLEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFFLLREHLEAVLSTLGERER
KVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLSKLRDHAFADQLRGYLD

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=667244 OG239_RS16460 WP_328925617.1 3379016..3380146(-) (rpoS) [Streptomyces sp. NBC_00868]
GTGTCGTACCCCACACTGAAGTGCGGTGCCCCCGTCCTCGGAGCCCTGGAGGTCGCCCCCGTGCAGACCCGGATCCTGAC
CGTGACCGTGAACGTGAGCGAGTCCTCGGAACCCGCAGAGGCCGAAGCCGTGGACGAAGAGCACGAAGAGCCCGAGGTAC
TTGAGCTGATCGAGCCGGTGCCCCCGCAGCGCAAACGGACCTCGGCGGACGGTGGGGCGGGCCCGTCCGCCGATCTGTTC
CGGCAGTACCTGCGCGAGATAGGCAGGATCCCGCTGCTGACCGCAGCCGAGGAGGTGGACCTCGCGCGGCGCGTCGAAGC
CGGACTGTTCGCCGAGGAGAAACTGGGCAGCACCCCGGACCTCGACTCCCAGCTCGCCCTGGACCTCGACAAACTCGTCG
TCATGGGGCGCATGGCCAAACGCCGGCTGATCGAGTCGAACCTGCGGCTCGTCGTCTCCGTCGCGAAGCGGTACGTGGGA
CGCGGGCTCACCATGCTCGACCTCGTGCAGGAGGGGAACCTCGGGCTCATCCGGGCCGTCGAGAAGTTCGACTACGCCCG
CGGGTACAAGTTCTCCACCTACGCCACCTGGTGGATCCGGCAGGCGATGTCCCGGGCCCTCGCCGACCAGGCCCGGACCA
TCCGGGTGCCCGTCCACGTCGTGGAGCTGATCAACCGCGTCGTGCGCGTACAGCGCCGCATGCTCCAGGAGCGCGGGTAC
GAGCCCACCGCCGAGGAGGTCGCCGCCCACCTGGAGCTGACCCCGGAGCGGGTCCTGGAGGTGCTCCGCCTCGCCCAGGA
ACCGGTCTCGCTGCACGCCCCGGTCGGTGAGGAGGACGACGTCGCGCTCGGGGACCTCATCGAGGACGGCGACGCCGCCT
CGCCCGTGGAGTCCGCCGCGTTCTTCCTGCTGCGCGAGCACCTGGAAGCCGTGCTGTCGACCCTCGGCGAGCGCGAGCGG
AAGGTCGTCCAGCTACGGTACGGGCTCGCCGACGGGCGCCCGCGCACCCTGGAGGAGATCGGCCGGATCTTCGGCGTGAC
GCGCGAGCGGATCCGCCAGATCGAGTCCAAGACCCTCAGCAAACTGCGCGACCACGCCTTCGCCGACCAGCTCCGCGGCT
ACCTGGACTGA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(78-111)

Sigma-70 region 2 (Sigma70_r2)

(143-212)

Sigma-70, region 4 (Sigma70_r4)

(311-363)

Sigma-70 region 3 (Sigma70_r3)

(222-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.816

91.223

0.372