Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG239_RS16455 Genome accession   NZ_CP108814
Coordinates   3376985..3378907 (+) Length   640 a.a.
NCBI ID   WP_405679985.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00868     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3371985..3383907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG239_RS16440 (OG239_16470) - 3373260..3373559 (+) 300 WP_405679986.1 YtxH domain-containing protein -
  OG239_RS16445 (OG239_16475) - 3373609..3375057 (+) 1449 WP_328925614.1 FGGY family carbohydrate kinase -
  OG239_RS16450 (OG239_16480) rcrP 3375255..3376988 (+) 1734 WP_328925615.1 ABC transporter ATP-binding protein Regulator
  OG239_RS16455 (OG239_16485) rcrQ 3376985..3378907 (+) 1923 WP_405679985.1 ABC transporter ATP-binding protein Regulator
  OG239_RS16460 (OG239_16490) rpoS 3379016..3380146 (-) 1131 WP_328925617.1 RNA polymerase sigma factor Regulator
  OG239_RS16465 (OG239_16495) - 3380287..3382374 (-) 2088 WP_405679984.1 molybdopterin oxidoreductase family protein -
  OG239_RS16470 (OG239_16500) - 3382560..3383330 (-) 771 WP_405679983.1 glucose 1-dehydrogenase -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 68667.13 Da        Isoelectric Point: 5.0253

>NTDB_id=667243 OG239_RS16455 WP_405679985.1 3376985..3378907(+) (rcrQ) [Streptomyces sp. NBC_00868]
MSGPGGRMMAGPAQRSMDFKGSGKRLLRQLAQDRVKLWGMVAAVVGSVGCAVVGPKILGQATDLVFAGIVGRQMPAGLTK
QQALDGLRDRGQGGMADMLSGTDFTPGEGIDFGAVGVVALWALVVFVLAGLLMLVATRLSNHVMNGTVYRMREELQAKLS
RLPLSYFDQQKRGEVLSRATNDIDNIGQTLQQTMGQLLNSLLTIVGVLVMMFWISPLLALVALGTVPVSVFVAAKIGKKS
QPQFVAQWKSTGALNAHIEEMYSGHTLVKVFGRQKESAAVFAEQNEALYRASFKAQLVSGIMQPVMLFISNINYVLIAVV
GGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGIASAERVYELLDAEEQEPDAEVPECPEELRGQVTLDKV
AFRYEPDKPLIENLSLSVEPGQTVAIVGPTGAGKTTLVNLLMRFYEVTGGEIALDGVDIAKMTREELRGGIGMVLQDTWL
FGGTIADNIAYGASREVTRAEIEEAARAAHADRFIRTLPDGYDTVLDDEGAGVSAGEKQLITIARAFLSDPVILVLDEAT
SSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMESGSIVEQGTHEELLASGGAYARLYAAQFAQAVAEVD

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=667243 OG239_RS16455 WP_405679985.1 3376985..3378907(+) (rcrQ) [Streptomyces sp. NBC_00868]
ATGAGCGGGCCCGGAGGACGGATGATGGCGGGGCCGGCCCAGCGGTCCATGGATTTCAAGGGTTCGGGGAAGCGGCTGCT
GCGTCAGCTCGCACAGGACCGGGTCAAGCTGTGGGGCATGGTCGCGGCCGTCGTCGGCAGCGTCGGCTGCGCGGTCGTCG
GTCCGAAGATCCTCGGCCAGGCCACCGACCTGGTCTTCGCGGGGATCGTCGGCCGGCAGATGCCGGCCGGGCTCACCAAG
CAGCAGGCGCTGGACGGGCTGCGCGACAGGGGCCAGGGCGGCATGGCGGACATGCTGTCCGGCACCGACTTCACCCCGGG
CGAGGGCATCGACTTCGGTGCCGTCGGGGTCGTCGCCCTCTGGGCGCTGGTGGTCTTCGTCCTCGCGGGCCTGCTCATGC
TGGTCGCCACGAGGCTGTCGAACCACGTGATGAACGGCACCGTCTACCGGATGCGCGAGGAGCTCCAGGCGAAGCTGTCG
CGGCTGCCGCTGTCGTACTTCGACCAGCAGAAGCGAGGTGAGGTGCTCAGCCGGGCCACCAACGACATAGACAACATCGG
CCAGACGCTGCAGCAGACGATGGGCCAGTTGCTGAACTCGCTGCTGACCATCGTCGGCGTGCTGGTGATGATGTTCTGGA
TCTCGCCGCTGCTGGCGCTGGTCGCGCTGGGGACCGTACCGGTCTCCGTCTTCGTCGCGGCGAAGATCGGCAAGAAGTCG
CAGCCGCAGTTCGTGGCGCAGTGGAAATCGACCGGTGCGCTGAACGCCCACATCGAGGAGATGTACTCGGGCCACACGCT
GGTCAAGGTCTTCGGCCGGCAGAAGGAGTCCGCGGCCGTCTTCGCCGAGCAGAACGAGGCGCTGTACCGGGCCTCCTTCA
AGGCGCAGCTGGTCAGCGGCATCATGCAGCCGGTGATGCTGTTCATCTCGAACATCAACTACGTGCTGATAGCCGTCGTC
GGCGGGCTCCGGGTCGCCTCGGGCACCCTGTCGATCGGTGATGTGCAGGCCTTCATCCAGTACTCGCGGCAGTTCTCGAT
GCCGCTGACCCAGGTCGCCTCGATGGCGAACCTCGTGCAGTCCGGTATCGCCTCGGCGGAGCGGGTCTACGAGCTGCTCG
ACGCGGAGGAGCAGGAGCCGGACGCCGAGGTTCCGGAGTGCCCGGAGGAGCTGCGCGGCCAGGTCACGCTCGACAAGGTG
GCCTTCCGCTACGAGCCGGACAAGCCGCTGATCGAGAACCTCTCGCTGTCGGTCGAGCCGGGCCAGACGGTCGCGATCGT
CGGCCCGACGGGCGCCGGCAAGACGACGCTCGTCAACCTGCTGATGCGGTTCTACGAGGTCACGGGCGGCGAGATCGCCC
TGGACGGCGTGGACATCGCGAAGATGACGCGCGAGGAGCTGCGCGGCGGCATCGGCATGGTGCTGCAGGACACCTGGCTG
TTCGGCGGCACCATCGCGGACAACATCGCCTACGGCGCCTCGCGCGAGGTCACGCGCGCCGAGATCGAGGAGGCGGCGCG
TGCGGCCCACGCGGACCGCTTCATCCGCACCCTCCCGGACGGCTACGACACCGTGCTGGACGACGAGGGCGCGGGCGTCA
GCGCCGGCGAGAAGCAGCTGATCACCATCGCCCGGGCGTTCCTGTCGGACCCGGTGATCCTGGTGCTCGACGAGGCGACG
AGCTCGGTCGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCGCGCTTGGCGCACGGCCGTACGTCGTTCGTGAT
CGCGCACCGGCTGTCCACGATCCGCGACGCGGACGTGATCCTGGTGATGGAGAGCGGCTCGATCGTGGAGCAGGGCACGC
ACGAGGAGCTGCTGGCATCCGGCGGCGCCTACGCGCGGCTGTACGCGGCGCAGTTCGCCCAGGCGGTCGCCGAGGTCGAC
TAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(412-561)

ABC transporter transmembrane region (ABC_membrane)

(55-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.032

97.188

0.389

Multiple sequence alignment