Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG79_RS05415 Genome accession   NZ_CP094128
Coordinates   1138560..1138970 (-) Length   136 a.a.
NCBI ID   WP_245107138.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe055     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1133560..1143970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG79_RS05375 (MPG79_05375) - 1133963..1135069 (-) 1107 WP_245107122.1 hypothetical protein -
  MPG79_RS05380 (MPG79_05380) - 1135059..1135844 (-) 786 WP_245107125.1 hypothetical protein -
  MPG79_RS05385 (MPG79_05385) - 1135844..1136230 (-) 387 WP_220936667.1 DUF1294 domain-containing protein -
  MPG79_RS05390 (MPG79_05390) - 1136382..1136540 (-) 159 WP_245107128.1 hypothetical protein -
  MPG79_RS05395 (MPG79_05395) - 1136509..1137225 (-) 717 WP_245107130.1 lysozyme -
  MPG79_RS05400 (MPG79_05400) - 1137236..1137796 (-) 561 WP_245107132.1 hypothetical protein -
  MPG79_RS05405 (MPG79_05405) - 1137780..1138118 (-) 339 WP_000699911.1 hypothetical protein -
  MPG79_RS05410 (MPG79_05410) - 1138309..1138593 (-) 285 WP_245107135.1 tetratricopeptide repeat protein -
  MPG79_RS05415 (MPG79_05415) dprB 1138560..1138970 (-) 411 WP_245107138.1 Holliday junction resolvase RuvX Machinery gene
  MPG79_RS05420 (MPG79_05420) dprA 1138967..1139767 (-) 801 WP_048943967.1 DNA-processing protein DprA Machinery gene
  MPG79_RS05425 (MPG79_05425) minE 1139778..1140011 (-) 234 WP_245107142.1 cell division topological specificity factor MinE -
  MPG79_RS05430 (MPG79_05430) minD 1140008..1140814 (-) 807 WP_245107144.1 septum site-determining protein MinD -
  MPG79_RS05435 (MPG79_05435) ilvC 1140838..1141830 (-) 993 WP_245107145.1 ketol-acid reductoisomerase -
  MPG79_RS05445 (MPG79_05445) - 1142078..1142860 (+) 783 WP_245107147.1 NAD+ synthase -
  MPG79_RS05450 (MPG79_05450) - 1142857..1143795 (+) 939 WP_245107149.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15505.10 Da        Isoelectric Point: 9.1283

>NTDB_id=667242 MPG79_RS05415 WP_245107138.1 1138560..1138970(-) (dprB) [Helicobacter pylori strain Hpfe055]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYTDTNARIEYFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGRKNKRLAIKDGRLDSLSACRILERYCQQVLKKLAI

Nucleotide


Download         Length: 411 bp        

>NTDB_id=667242 MPG79_RS05415 WP_245107138.1 1138560..1138970(-) (dprB) [Helicobacter pylori strain Hpfe055]
GTGATTTTGGCATGCGATGTGGGCTTAAAACGCATTGGGATCGCTGCGCTTTTAAACGGCGTTATTTTACCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAACGAAAGCTATACGGACACGAACGCGCGCATTGAATATTTCATCAAGCTTTTGGATTTTAAGGGTGAA
ATCGTTTTTATTAATGAAGATAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAGGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAAAGC
TTGCGATTTGA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.455

97.059

0.926

Multiple sequence alignment