Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | MPG06_RS00755 | Genome accession | NZ_CP094126 |
| Coordinates | 159184..160320 (+) | Length | 378 a.a. |
| NCBI ID | WP_245057933.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe056 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 154184..165320
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG06_RS00720 (MPG06_00720) | panD | 154636..154986 (+) | 351 | WP_245057931.1 | aspartate 1-decarboxylase | - |
| MPG06_RS00725 (MPG06_00725) | - | 154997..155290 (+) | 294 | WP_000347917.1 | YbaB/EbfC family nucleoid-associated protein | - |
| MPG06_RS00730 (MPG06_00730) | - | 155290..156285 (+) | 996 | WP_245058433.1 | PDZ domain-containing protein | - |
| MPG06_RS00735 (MPG06_00735) | comB6 | 156293..157348 (+) | 1056 | WP_245058435.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| MPG06_RS00740 (MPG06_00740) | comB7 | 157364..157489 (+) | 126 | WP_001217874.1 | hypothetical protein | Machinery gene |
| MPG06_RS00745 (MPG06_00745) | comB8 | 157486..158229 (+) | 744 | WP_015645815.1 | virB8 family protein | Machinery gene |
| MPG06_RS00750 (MPG06_00750) | comB9 | 158229..159191 (+) | 963 | WP_245057932.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| MPG06_RS00755 (MPG06_00755) | comB10 | 159184..160320 (+) | 1137 | WP_245057933.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| MPG06_RS00760 (MPG06_00760) | - | 160390..161802 (+) | 1413 | WP_245057934.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| MPG06_RS00765 (MPG06_00765) | gmd | 161816..162961 (+) | 1146 | WP_245057935.1 | GDP-mannose 4,6-dehydratase | - |
| MPG06_RS00770 (MPG06_00770) | - | 162954..163886 (+) | 933 | WP_001002429.1 | GDP-L-fucose synthase | - |
| MPG06_RS00775 (MPG06_00775) | hypE | 164111..165109 (-) | 999 | WP_245057936.1 | hydrogenase expression/formation protein HypE | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42050.63 Da Isoelectric Point: 9.8461
>NTDB_id=667214 MPG06_RS00755 WP_245057933.1 159184..160320(+) (comB10) [Helicobacter pylori strain Hpfe056]
MNKWIKGVLIFVGGFATITTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTSPPIDLKANTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKEDEVIAEFLK
MNKWIKGVLIFVGGFATITTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTSPPIDLKANTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKEDEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=667214 MPG06_RS00755 WP_245057933.1 159184..160320(+) (comB10) [Helicobacter pylori strain Hpfe056]
ATGAATAAGTGGATTAAGGGGGTGCTTATTTTTGTAGGGGGTTTTGCAACGATTACAACAATTTCTTTAATCTATCACCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGCATTGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAAAGCGATATTTTTGCGAGCATGGGCAAGGCCGTCTTAA
TCCCTAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGTTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTTCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGGATGAAGTTATCG
CTGAGTTTTTGAAGTGA
ATGAATAAGTGGATTAAGGGGGTGCTTATTTTTGTAGGGGGTTTTGCAACGATTACAACAATTTCTTTAATCTATCACCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGCATTGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAAAGCGATATTTTTGCGAGCATGGGCAAGGCCGTCTTAA
TCCCTAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGTTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTTCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGGATGAAGTTATCG
CTGAGTTTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
95.503 |
100 |
0.955 |