Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   MPG06_RS00745 Genome accession   NZ_CP094126
Coordinates   157486..158229 (+) Length   247 a.a.
NCBI ID   WP_015645815.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe056     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 152486..163229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG06_RS00720 (MPG06_00720) panD 154636..154986 (+) 351 WP_245057931.1 aspartate 1-decarboxylase -
  MPG06_RS00725 (MPG06_00725) - 154997..155290 (+) 294 WP_000347917.1 YbaB/EbfC family nucleoid-associated protein -
  MPG06_RS00730 (MPG06_00730) - 155290..156285 (+) 996 WP_245058433.1 PDZ domain-containing protein -
  MPG06_RS00735 (MPG06_00735) comB6 156293..157348 (+) 1056 WP_245058435.1 P-type conjugative transfer protein TrbL Machinery gene
  MPG06_RS00740 (MPG06_00740) comB7 157364..157489 (+) 126 WP_001217874.1 hypothetical protein Machinery gene
  MPG06_RS00745 (MPG06_00745) comB8 157486..158229 (+) 744 WP_015645815.1 virB8 family protein Machinery gene
  MPG06_RS00750 (MPG06_00750) comB9 158229..159191 (+) 963 WP_245057932.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPG06_RS00755 (MPG06_00755) comB10 159184..160320 (+) 1137 WP_245057933.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG06_RS00760 (MPG06_00760) - 160390..161802 (+) 1413 WP_245057934.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPG06_RS00765 (MPG06_00765) gmd 161816..162961 (+) 1146 WP_245057935.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28726.99 Da        Isoelectric Point: 8.9546

>NTDB_id=667212 MPG06_RS00745 WP_015645815.1 157486..158229(+) (comB8) [Helicobacter pylori strain Hpfe056]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
VQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=667212 MPG06_RS00745 WP_015645815.1 157486..158229(+) (comB8) [Helicobacter pylori strain Hpfe056]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTCAGATTAGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATCGTGTTAATCAGTGTTTTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAAGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGGGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATCAAAACGCAAAATAGCATTTAT
GTGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
TTCTATTGCAGCTAAACTCATGAATGAAAACAAACTAGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCAGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACTCGCTACAGCATCACTGAAATC
GCACCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.976

100

0.98

Multiple sequence alignment