Detailed information NTG0667213

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG06_RS00750
• Genome accession: NZ_CP094126
• Coordinates: 158229..159191 (+)
• Length: 320 a.a.
• NCBI ID: WP_245057932.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe056
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 153229..164191

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG06_RS00720 (MPG06_00720)	panD	154636..154986 (+)	351	WP_245057931.1	aspartate 1-decarboxylase	-
MPG06_RS00725 (MPG06_00725)	-	154997..155290 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
MPG06_RS00730 (MPG06_00730)	-	155290..156285 (+)	996	WP_245058433.1	PDZ domain-containing protein	-
MPG06_RS00735 (MPG06_00735)	comB6	156293..157348 (+)	1056	WP_245058435.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG06_RS00740 (MPG06_00740)	comB7	157364..157489 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
MPG06_RS00745 (MPG06_00745)	comB8	157486..158229 (+)	744	WP_015645815.1	virB8 family protein	Machinery gene
MPG06_RS00750 (MPG06_00750)	comB9	158229..159191 (+)	963	WP_245057932.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG06_RS00755 (MPG06_00755)	comB10	159184..160320 (+)	1137	WP_245057933.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG06_RS00760 (MPG06_00760)	-	160390..161802 (+)	1413	WP_245057934.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG06_RS00765 (MPG06_00765)	gmd	161816..162961 (+)	1146	WP_245057935.1	GDP-mannose 4,6-dehydratase	-
MPG06_RS00770 (MPG06_00770)	-	162954..163886 (+)	933	WP_001002429.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36870.45 Da
• Isoelectric Point: 9.2454

>NTDB_id=667213 MPG06_RS00750 WP_245057932.1 158229..159191(+) (comB9) [Helicobacter pylori strain Hpfe056]
MRKVLCALVGFLLVFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLENAPTNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLWICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=667213 MPG06_RS00750 WP_245057932.1 158229..159191(+) (comB9) [Helicobacter pylori strain Hpfe056]
ATGCGTAAGGTTTTATGCGCTCTTGTGGGCTTTTTGTTGGTTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGAATTTAAACCACCCCATGCAAGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAGAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATACCCTTGAAAATGCCCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAATACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTGTGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCACTCTCTAA
ATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCGCTG
AAGATGTCTCGGCTAAATGGACTTTAAGGCTGGGCAAGGACTATTTGTGTATCCGTTTTGTCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.638	100	0.944