Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   MPG74_RS05635 Genome accession   NZ_CP094120
Coordinates   1176873..1177673 (-) Length   266 a.a.
NCBI ID   WP_245069039.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe061     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 1171873..1182673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG74_RS05600 (MPG74_05600) - 1172834..1173619 (-) 786 WP_245069029.1 hypothetical protein -
  MPG74_RS05605 (MPG74_05605) - 1173619..1174005 (-) 387 WP_154488973.1 DUF1294 domain-containing protein -
  MPG74_RS05610 (MPG74_05610) - 1174333..1174803 (-) 471 WP_245069031.1 hypothetical protein -
  MPG74_RS05615 (MPG74_05615) - 1174909..1175469 (-) 561 WP_245069033.1 hypothetical protein -
  MPG74_RS05620 (MPG74_05620) - 1175462..1175791 (-) 330 WP_180406427.1 hypothetical protein -
  MPG74_RS05625 (MPG74_05625) - 1175979..1176341 (-) 363 WP_245069035.1 tetratricopeptide repeat protein -
  MPG74_RS05630 (MPG74_05630) dprB 1176472..1176876 (-) 405 WP_245069037.1 Holliday junction resolvase RuvX Machinery gene
  MPG74_RS05635 (MPG74_05635) dprA 1176873..1177673 (-) 801 WP_245069039.1 DNA-processing protein DprA Machinery gene
  MPG74_RS05640 (MPG74_05640) minE 1177685..1177918 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG74_RS05645 (MPG74_05645) minD 1177915..1178721 (-) 807 WP_001019101.1 septum site-determining protein MinD -
  MPG74_RS05650 (MPG74_05650) ilvC 1178746..1179738 (-) 993 WP_245069041.1 ketol-acid reductoisomerase -
  MPG74_RS05660 (MPG74_05660) - 1179987..1180769 (+) 783 WP_220823347.1 NAD+ synthase -
  MPG74_RS05665 (MPG74_05665) - 1180766..1181704 (+) 939 WP_245069043.1 tetraacyldisaccharide 4'-kinase -
  MPG74_RS05670 (MPG74_05670) pseH 1181637..1182179 (-) 543 WP_245069045.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -

Sequence


Protein


Download         Length: 266 a.a.        Molecular weight: 29790.77 Da        Isoelectric Point: 8.9017

>NTDB_id=667136 MPG74_RS05635 WP_245069039.1 1176873..1177673(-) (dprA) [Helicobacter pylori strain Hpfe061]
MKSNFQYSALEDIPKAFDILKDPPKKLYCVGDIKLLRAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGV
DIIAQENALPKTIMLSPCSLDLIYPTNNHKVIQEIAQNGLILSEYEKDFMPVKGSFLARNRLVIALSDAVIIPQADLKSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDHHLKEMPEIKDEFLEYCAKNPSYEEAY
LKFGDKLLEYELLGKIKRINHIVVLA

Nucleotide


Download         Length: 801 bp        

>NTDB_id=667136 MPG74_RS05635 WP_245069039.1 1176873..1177673(-) (dprA) [Helicobacter pylori strain Hpfe061]
ATGAAAAGCAATTTCCAATACAGCGCGCTAGAGGATATCCCTAAAGCCTTTGACATTCTCAAAGACCCCCCTAAAAAGCT
CTATTGTGTGGGCGATATAAAGCTTTTGAGAGCACCTTTAAAAGTGGCTATCATCGGCACAAGAAGACCCACCCCTTACA
GCAAGCAACACACCATCACTCTAGCCAGAGAGCTTGCTAAAAATGGCGCAGTTATTGTGAGCGGAGGAGCGTTAGGTGTG
GATATTATTGCTCAAGAAAACGCCTTACCAAAAACCATCATGCTTTCGCCTTGCAGTTTGGATTTAATCTATCCCACGAA
CAACCATAAAGTGATCCAAGAAATCGCGCAAAACGGCTTGATTTTAAGCGAATATGAAAAGGATTTTATGCCCGTTAAAG
GCTCTTTTTTAGCCAGAAACCGCCTGGTGATTGCTTTAAGCGATGCGGTAATTATCCCCCAAGCGGATTTAAAAAGCGGC
TCTATGAGCAGCGCTAGATTAGCCCAAAAGTATCAAAAACCCTTATTTGTTTTACCCCAGCGCCTGAATGAGAGCGATGG
CACTAATGAGCTTTTAGAAAAAGGGCAGGCTCAAGGGATATTTAATATTCAAAATTTTATAAACACCCTTTTAAAAGACC
ACCATTTAAAAGAAATGCCTGAAATCAAAGACGAATTTTTGGAATATTGCGCCAAAAACCCAAGCTATGAAGAGGCGTAT
CTCAAATTTGGGGACAAGCTTTTAGAATACGAGCTGTTGGGTAAGATTAAGCGCATCAATCATATCGTGGTGTTAGCGTG
A


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

95.489

100

0.955

  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.673

84.962

0.414


Multiple sequence alignment