Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG74_RS05630 Genome accession   NZ_CP094120
Coordinates   1176472..1176876 (-) Length   134 a.a.
NCBI ID   WP_245069037.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe061     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1171472..1181876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG74_RS05595 (MPG74_05595) - 1171780..1172844 (-) 1065 WP_245069027.1 hypothetical protein -
  MPG74_RS05600 (MPG74_05600) - 1172834..1173619 (-) 786 WP_245069029.1 hypothetical protein -
  MPG74_RS05605 (MPG74_05605) - 1173619..1174005 (-) 387 WP_154488973.1 DUF1294 domain-containing protein -
  MPG74_RS05610 (MPG74_05610) - 1174333..1174803 (-) 471 WP_245069031.1 hypothetical protein -
  MPG74_RS05615 (MPG74_05615) - 1174909..1175469 (-) 561 WP_245069033.1 hypothetical protein -
  MPG74_RS05620 (MPG74_05620) - 1175462..1175791 (-) 330 WP_180406427.1 hypothetical protein -
  MPG74_RS05625 (MPG74_05625) - 1175979..1176341 (-) 363 WP_245069035.1 tetratricopeptide repeat protein -
  MPG74_RS05630 (MPG74_05630) dprB 1176472..1176876 (-) 405 WP_245069037.1 Holliday junction resolvase RuvX Machinery gene
  MPG74_RS05635 (MPG74_05635) dprA 1176873..1177673 (-) 801 WP_245069039.1 DNA-processing protein DprA Machinery gene
  MPG74_RS05640 (MPG74_05640) minE 1177685..1177918 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG74_RS05645 (MPG74_05645) minD 1177915..1178721 (-) 807 WP_001019101.1 septum site-determining protein MinD -
  MPG74_RS05650 (MPG74_05650) ilvC 1178746..1179738 (-) 993 WP_245069041.1 ketol-acid reductoisomerase -
  MPG74_RS05660 (MPG74_05660) - 1179987..1180769 (+) 783 WP_220823347.1 NAD+ synthase -
  MPG74_RS05665 (MPG74_05665) - 1180766..1181704 (+) 939 WP_245069043.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15181.72 Da        Isoelectric Point: 10.0440

>NTDB_id=667135 MPG74_RS05630 WP_245069037.1 1176472..1176876(-) (dprB) [Helicobacter pylori strain Hpfe061]
MILACDVGLKRIGIAVLLNGVILPLEAILRHNRNQASRDLSDLLRGKNIQVLVVGKPNESYTDTNARIEHFIKLLDFKGE
IVFTNEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=667135 MPG74_RS05630 WP_245069037.1 1176472..1176876(-) (dprB) [Helicobacter pylori strain Hpfe061]
GTGATTTTGGCATGCGATGTGGGGTTAAAGCGCATTGGGATCGCTGTGCTTTTAAACGGCGTTATTTTGCCCTTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGGAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAACGAAAGCTATACGGACACGAATGCGCGCATTGAGCATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTACTAATGAGGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTAAAAAAGC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

93.939

98.507

0.925

Multiple sequence alignment