Detailed information NTG0667129

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG74_RS00935
• Genome accession: NZ_CP094120
• Coordinates: 195395..196357 (+)
• Length: 320 a.a.
• NCBI ID: WP_180577520.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe061
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 190395..201357

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG74_RS00905 (MPG74_00905)	panD	191814..192164 (+)	351	WP_245069717.1	aspartate 1-decarboxylase	-
MPG74_RS00910 (MPG74_00910)	-	192175..192468 (+)	294	WP_000347923.1	YbaB/EbfC family nucleoid-associated protein	-
MPG74_RS00915 (MPG74_00915)	-	192468..193463 (+)	996	WP_245070253.1	PDZ domain-containing protein	-
MPG74_RS00920 (MPG74_00920)	comB6	193471..194526 (+)	1056	WP_245070255.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG74_RS00925 (MPG74_00925)	comB7	194542..194655 (+)	114	WP_001217877.1	hypothetical protein	Machinery gene
MPG74_RS00930 (MPG74_00930)	comB8	194652..195395 (+)	744	WP_245069719.1	virB8 family protein	Machinery gene
MPG74_RS00935 (MPG74_00935)	comB9	195395..196357 (+)	963	WP_180577520.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG74_RS00940 (MPG74_00940)	comB10	196350..197486 (+)	1137	WP_245069722.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG74_RS00945 (MPG74_00945)	-	197552..198967 (+)	1416	WP_245069724.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG74_RS00950 (MPG74_00950)	gmd	198978..200123 (+)	1146	WP_001918970.1	GDP-mannose 4,6-dehydratase	-
MPG74_RS00955 (MPG74_00955)	-	200116..201048 (+)	933	WP_180521657.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36900.57 Da
• Isoelectric Point: 9.3756

>NTDB_id=667129 MPG74_RS00935 WP_180577520.1 195395..196357(+) (comB9) [Helicobacter pylori strain Hpfe061]
MRKVLCALVGFLLVFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKLQNKENTLEKAPTNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLWICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=667129 MPG74_RS00935 WP_180577520.1 195395..196357(+) (comB9) [Helicobacter pylori strain Hpfe061]
ATGCGTAAGGTTTTATGCGCTCTTGTGGGCTTTTTGTTGGTTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGTTTTGATGCGAAAATTTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCTTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGTTCCAAACACCCTAATTTACAAGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCTACAAAACAAAGAAAATACCCTTGAAAAGGCCCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAATACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTGTGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCGCTG
AAGATGTCTCGGCTAAATGGACTTTAAGGCTGGGCAAGGACTATTTGTGTATCCGTTTTGTCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.025	100	0.938