Detailed information NTG0667001

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG22_RS00725
• Genome accession: NZ_CP094111
• Coordinates: 150409..151371 (+)
• Length: 320 a.a.
• NCBI ID: WP_245065412.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe070
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 145409..156371

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG22_RS00695 (MPG22_00695)	panD	146824..147174 (+)	351	WP_000142208.1	aspartate 1-decarboxylase	-
MPG22_RS00700 (MPG22_00700)	-	147185..147478 (+)	294	WP_000347922.1	YbaB/EbfC family nucleoid-associated protein	-
MPG22_RS00705 (MPG22_00705)	-	147478..148473 (+)	996	WP_245065928.1	PDZ domain-containing protein	-
MPG22_RS00710 (MPG22_00710)	comB6	148479..149534 (+)	1056	WP_245065930.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG22_RS00715 (MPG22_00715)	comB7	149550..149675 (+)	126	WP_001217867.1	hypothetical protein	Machinery gene
MPG22_RS00720 (MPG22_00720)	comB8	149672..150409 (+)	738	WP_245065411.1	virB8 family protein	Machinery gene
MPG22_RS00725 (MPG22_00725)	comB9	150409..151371 (+)	963	WP_245065412.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG22_RS00730 (MPG22_00730)	comB10	151364..152500 (+)	1137	WP_245065413.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG22_RS00735 (MPG22_00735)	-	152570..153982 (+)	1413	WP_245065414.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG22_RS00740 (MPG22_00740)	gmd	153996..155141 (+)	1146	WP_245065415.1	GDP-mannose 4,6-dehydratase	-
MPG22_RS00745 (MPG22_00745)	-	155134..156066 (+)	933	WP_024117278.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36850.45 Da
• Isoelectric Point: 9.3455

>NTDB_id=667001 MPG22_RS00725 WP_245065412.1 150409..151371(+) (comB9) [Helicobacter pylori strain Hpfe070]
MRKVLYALVGFLLAFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQIQENTFEKALTNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=667001 MPG22_RS00725 WP_245065412.1 150409..151371(+) (comB9) [Helicobacter pylori strain Hpfe070]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTATTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGTATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCACAAATTCAAGAAAATACCTTTGAAAAGGCTCTCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTTAACGATAAGCAATTCACCTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTTCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCGCTG
AAGATGTTTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATCCGTTTTGTCAAAAAGGGCAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.638	100	0.944