Detailed information NTG0666998

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: MPG22_RS00710
• Genome accession: NZ_CP094111
• Coordinates: 148479..149534 (+)
• Length: 351 a.a.
• NCBI ID: WP_245065930.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe070
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 143479..154534

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG22_RS00680 (MPG22_00680)	-	143904..144317 (+)	414	WP_001023005.1	universal stress protein	-
MPG22_RS00685 (MPG22_00685)	-	144337..144612 (+)	276	WP_000784917.1	ATP-dependent Clp protease adaptor ClpS	-
MPG22_RS00690 (MPG22_00690)	-	144612..146834 (+)	2223	WP_245065410.1	ATP-dependent Clp protease ATP-binding subunit	-
MPG22_RS00695 (MPG22_00695)	panD	146824..147174 (+)	351	WP_000142208.1	aspartate 1-decarboxylase	-
MPG22_RS00700 (MPG22_00700)	-	147185..147478 (+)	294	WP_000347922.1	YbaB/EbfC family nucleoid-associated protein	-
MPG22_RS00705 (MPG22_00705)	-	147478..148473 (+)	996	WP_245065928.1	PDZ domain-containing protein	-
MPG22_RS00710 (MPG22_00710)	comB6	148479..149534 (+)	1056	WP_245065930.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG22_RS00715 (MPG22_00715)	comB7	149550..149675 (+)	126	WP_001217867.1	hypothetical protein	Machinery gene
MPG22_RS00720 (MPG22_00720)	comB8	149672..150409 (+)	738	WP_245065411.1	virB8 family protein	Machinery gene
MPG22_RS00725 (MPG22_00725)	comB9	150409..151371 (+)	963	WP_245065412.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG22_RS00730 (MPG22_00730)	comB10	151364..152500 (+)	1137	WP_245065413.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG22_RS00735 (MPG22_00735)	-	152570..153982 (+)	1413	WP_245065414.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39815.79 Da
• Isoelectric Point: 8.8165

>NTDB_id=666998 MPG22_RS00710 WP_245065930.1 148479..149534(+) (comB6) [Helicobacter pylori strain Hpfe070]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNLFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANISQNALNSLQYITTPPASSPISTSTRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=666998 MPG22_RS00710 WP_245065930.1 148479..149534(+) (comB6) [Helicobacter pylori strain Hpfe070]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTTTAACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATCTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCACTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGTTCTTTAGGGGTGCTGTTTTTGGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGATTTTACAAGCCTTTTTTGTTGTTGG
TGGGCTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACATCAGCCAAAACGCCCTTAATTCCTTACAATACATCA
CGACCCCACCCGCTTCTTCTCCTATTTCTACTTCTACAAGAGAAAGTGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.296	100	0.963