Detailed information NTG0666956

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG41_RS00715
• Genome accession: NZ_CP094109
• Coordinates: 152473..153435 (+)
• Length: 320 a.a.
• NCBI ID: WP_245067968.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe072
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 147473..158435

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG41_RS00685 (MPG41_00685)	panD	148882..149232 (+)	351	WP_120843310.1	aspartate 1-decarboxylase	-
MPG41_RS00690 (MPG41_00690)	-	149243..149536 (+)	294	WP_000347916.1	YbaB/EbfC family nucleoid-associated protein	-
MPG41_RS00695 (MPG41_00695)	-	149536..150531 (+)	996	WP_245068533.1	PDZ domain-containing protein	-
MPG41_RS00700 (MPG41_00700)	comB6	150537..151592 (+)	1056	WP_245067967.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG41_RS00705 (MPG41_00705)	comB7	151608..151733 (+)	126	WP_001217867.1	hypothetical protein	Machinery gene
MPG41_RS00710 (MPG41_00710)	comB8	151730..152473 (+)	744	WP_000660533.1	virB8 family protein	Machinery gene
MPG41_RS00715 (MPG41_00715)	comB9	152473..153435 (+)	963	WP_245067968.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG41_RS00720 (MPG41_00720)	comB10	153428..154564 (+)	1137	WP_245067969.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG41_RS00725 (MPG41_00725)	-	154634..156049 (+)	1416	WP_245067970.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG41_RS00730 (MPG41_00730)	gmd	156060..157205 (+)	1146	WP_017283482.1	GDP-mannose 4,6-dehydratase	-
MPG41_RS00735 (MPG41_00735)	-	157198..158130 (+)	933	WP_245067971.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36783.33 Da
• Isoelectric Point: 9.2454

>NTDB_id=666956 MPG41_RS00715 WP_245067968.1 152473..153435(+) (comB9) [Helicobacter pylori strain Hpfe072]
MRKVLCTLVGFLLVSSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLENTPTNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=666956 MPG41_RS00715 WP_245067968.1 152473..153435(+) (comB9) [Helicobacter pylori strain Hpfe072]
ATGCGTAAGGTTTTATGCACTCTTGTGGGTTTTTTGTTGGTTTCTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTATTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATACCCTTGAAAATACCCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTCAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCAGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCGCTG
AAGATGTTTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.638	100	0.944