Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   MPG41_RS00710 Genome accession   NZ_CP094109
Coordinates   151730..152473 (+) Length   247 a.a.
NCBI ID   WP_000660533.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe072     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 146730..157473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG41_RS00685 (MPG41_00685) panD 148882..149232 (+) 351 WP_120843310.1 aspartate 1-decarboxylase -
  MPG41_RS00690 (MPG41_00690) - 149243..149536 (+) 294 WP_000347916.1 YbaB/EbfC family nucleoid-associated protein -
  MPG41_RS00695 (MPG41_00695) - 149536..150531 (+) 996 WP_245068533.1 PDZ domain-containing protein -
  MPG41_RS00700 (MPG41_00700) comB6 150537..151592 (+) 1056 WP_245067967.1 P-type conjugative transfer protein TrbL Machinery gene
  MPG41_RS00705 (MPG41_00705) comB7 151608..151733 (+) 126 WP_001217867.1 hypothetical protein Machinery gene
  MPG41_RS00710 (MPG41_00710) comB8 151730..152473 (+) 744 WP_000660533.1 virB8 family protein Machinery gene
  MPG41_RS00715 (MPG41_00715) comB9 152473..153435 (+) 963 WP_245067968.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPG41_RS00720 (MPG41_00720) comB10 153428..154564 (+) 1137 WP_245067969.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG41_RS00725 (MPG41_00725) - 154634..156049 (+) 1416 WP_245067970.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPG41_RS00730 (MPG41_00730) gmd 156060..157205 (+) 1146 WP_017283482.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28670.89 Da        Isoelectric Point: 8.9546

>NTDB_id=666955 MPG41_RS00710 WP_000660533.1 151730..152473(+) (comB8) [Helicobacter pylori strain Hpfe072]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAVVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=666955 MPG41_RS00710 WP_000660533.1 151730..152473(+) (comB8) [Helicobacter pylori strain Hpfe072]
ATGAAGGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGATTAGAGAGGAACCGCCTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGGTTGTTTTAATCAGTGTTTTACCCCTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGTTTGCAAAGCAGCTCTAAAGTGTGGCAACGCTTTGAGGATTTAATCAAAACGCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCCATTGCAGCTAAACTCATGAACGAAAACAAGTTGGTATATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACTCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTTACTCGCTACAGCATCACTGAAATC
GCGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

96.761

100

0.968