Detailed information NTG0666953

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: MPG41_RS00700
• Genome accession: NZ_CP094109
• Coordinates: 150537..151592 (+)
• Length: 351 a.a.
• NCBI ID: WP_245067967.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe072
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 145537..156592

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG41_RS00670 (MPG41_00670)	-	145959..146372 (+)	414	WP_001023005.1	universal stress protein	-
MPG41_RS00675 (MPG41_00675)	-	146392..146667 (+)	276	WP_000784933.1	ATP-dependent Clp protease adaptor ClpS	-
MPG41_RS00680 (MPG41_00680)	-	146667..148892 (+)	2226	WP_245067966.1	ATP-dependent Clp protease ATP-binding subunit	-
MPG41_RS00685 (MPG41_00685)	panD	148882..149232 (+)	351	WP_120843310.1	aspartate 1-decarboxylase	-
MPG41_RS00690 (MPG41_00690)	-	149243..149536 (+)	294	WP_000347916.1	YbaB/EbfC family nucleoid-associated protein	-
MPG41_RS00695 (MPG41_00695)	-	149536..150531 (+)	996	WP_245068533.1	PDZ domain-containing protein	-
MPG41_RS00700 (MPG41_00700)	comB6	150537..151592 (+)	1056	WP_245067967.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG41_RS00705 (MPG41_00705)	comB7	151608..151733 (+)	126	WP_001217867.1	hypothetical protein	Machinery gene
MPG41_RS00710 (MPG41_00710)	comB8	151730..152473 (+)	744	WP_000660533.1	virB8 family protein	Machinery gene
MPG41_RS00715 (MPG41_00715)	comB9	152473..153435 (+)	963	WP_245067968.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG41_RS00720 (MPG41_00720)	comB10	153428..154564 (+)	1137	WP_245067969.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG41_RS00725 (MPG41_00725)	-	154634..156049 (+)	1416	WP_245067970.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39869.85 Da
• Isoelectric Point: 8.8165

>NTDB_id=666953 MPG41_RS00700 WP_245067967.1 150537..151592(+) (comB6) [Helicobacter pylori strain Hpfe072]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFIGDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSTNLSQNALNSLQYITTPPVSSSVSSSMRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=666953 MPG41_RS00700 WP_245067967.1 150537..151592(+) (comB6) [Helicobacter pylori strain Hpfe072]
ATGAAAAATGACGCTTATGAAATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGCT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTCTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCGGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGATTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCACCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGTTTCTTCTAGCGTTTCTTCTTCTATGAGAGAAAGTGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACCCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	97.151	100	0.972