Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   MPG65_RS05415 Genome accession   NZ_CP094105
Coordinates   1145683..1146483 (-) Length   266 a.a.
NCBI ID   WP_245071706.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe076     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 1140683..1151483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG65_RS05370 (MPG65_05370) - 1141531..1142316 (-) 786 WP_245071694.1 hypothetical protein -
  MPG65_RS05375 (MPG65_05375) - 1142316..1142702 (-) 387 WP_245071696.1 DUF1294 domain-containing protein -
  MPG65_RS05380 (MPG65_05380) - 1143040..1143201 (-) 162 WP_180370962.1 lysozyme -
  MPG65_RS05385 (MPG65_05385) - 1143221..1143466 (-) 246 WP_245071698.1 lysozyme -
  MPG65_RS05390 (MPG65_05390) - 1143516..1143680 (-) 165 WP_245071700.1 lysozyme -
  MPG65_RS05395 (MPG65_05395) - 1143720..1144280 (-) 561 WP_245071702.1 DUF4670 domain-containing protein -
  MPG65_RS05400 (MPG65_05400) - 1144264..1144602 (-) 339 WP_000699911.1 hypothetical protein -
  MPG65_RS05405 (MPG65_05405) - 1144792..1145150 (-) 359 Protein_1050 tetratricopeptide repeat protein -
  MPG65_RS05410 (MPG65_05410) dprB 1145282..1145686 (-) 405 WP_245071704.1 Holliday junction resolvase RuvX Machinery gene
  MPG65_RS05415 (MPG65_05415) dprA 1145683..1146483 (-) 801 WP_245071706.1 DNA-processing protein DprA Machinery gene
  MPG65_RS05420 (MPG65_05420) minE 1146495..1146728 (-) 234 WP_180507922.1 cell division topological specificity factor MinE -
  MPG65_RS05425 (MPG65_05425) minD 1146725..1147531 (-) 807 WP_245071708.1 septum site-determining protein MinD -
  MPG65_RS05430 (MPG65_05430) ilvC 1147550..1148542 (-) 993 WP_245071710.1 ketol-acid reductoisomerase -
  MPG65_RS05440 (MPG65_05440) - 1148790..1149572 (+) 783 WP_245071712.1 NAD+ synthase -
  MPG65_RS05445 (MPG65_05445) - 1149569..1150507 (+) 939 WP_245071714.1 tetraacyldisaccharide 4'-kinase -
  MPG65_RS05450 (MPG65_05450) pseH 1150440..1150982 (-) 543 WP_245071716.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -

Sequence


Protein


Download         Length: 266 a.a.        Molecular weight: 29858.81 Da        Isoelectric Point: 8.5925

>NTDB_id=666901 MPG65_RS05415 WP_245071706.1 1145683..1146483(-) (dprA) [Helicobacter pylori strain Hpfe076]
MKSNFQYSVLENIPKAFDILKDPPKKLYCVGDIKLLDAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGV
DIIAQENALPKTIMLSPCSLDFIYPTNNHKVIQEIAQNGLILSEYEKDFMPVKGSFLARNRLVIALSDAVIIPQADLKSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDHHLKEMPEMKDEFLEYCTKNPSYEEAY
LKFGDKLLEYELLGKIKRINHIVVLA

Nucleotide


Download         Length: 801 bp        

>NTDB_id=666901 MPG65_RS05415 WP_245071706.1 1145683..1146483(-) (dprA) [Helicobacter pylori strain Hpfe076]
ATGAAAAGCAACTTCCAATACAGTGTGCTAGAGAATATCCCTAAAGCCTTTGACATTCTCAAAGACCCCCCTAAAAAGCT
CTATTGTGTGGGCGATATAAAGCTTTTAGACGCGCCTTTAAAAGTGGCTATCATCGGCACGAGAAGACCCACCCCTTATA
GCAAGCAACACACCATCACTCTAGCCAGAGAGCTTGCTAAAAATGGTGCGGTTATTGTGAGCGGAGGAGCGTTAGGCGTG
GATATTATCGCTCAAGAAAACGCCTTACCAAAAACCATCATGCTTTCGCCTTGCAGTTTGGATTTTATCTATCCCACGAA
CAATCATAAAGTGATCCAAGAAATCGCGCAAAACGGCTTGATTTTAAGCGAATATGAAAAGGATTTTATGCCTGTTAAAG
GCTCTTTTTTAGCGAGAAACCGCCTGGTGATCGCTTTAAGCGATGCGGTAATTATCCCCCAAGCGGATTTAAAAAGCGGC
TCTATGAGCAGCGCTAGATTAGCCCAAAAGTATCAAAAACCCTTATTTGTTTTGCCTCAGCGCTTGAATGAGAGCGATGG
CACTAATGAGCTTTTAGAAAAAGGGCAGGCTCAAGGGATATTTAATATTCAAAATTTTATAAACACCCTTTTAAAAGACC
ACCATTTAAAAGAAATGCCTGAAATGAAAGACGAATTTTTGGAATATTGCACCAAAAACCCAAGTTATGAAGAGGCGTAT
CTCAAATTTGGGGACAAGCTTTTAGAATACGAGCTGTTGGGTAAGATTAAACGCATCAATCATATCGTGGTGTTAGCGTG
A


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

96.617

100

0.966

  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.673

84.962

0.414