Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG65_RS05410 Genome accession   NZ_CP094105
Coordinates   1145282..1145686 (-) Length   134 a.a.
NCBI ID   WP_245071704.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe076     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1140282..1150686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG65_RS05365 (MPG65_05365) - 1140408..1141541 (-) 1134 WP_245071692.1 hypothetical protein -
  MPG65_RS05370 (MPG65_05370) - 1141531..1142316 (-) 786 WP_245071694.1 hypothetical protein -
  MPG65_RS05375 (MPG65_05375) - 1142316..1142702 (-) 387 WP_245071696.1 DUF1294 domain-containing protein -
  MPG65_RS05380 (MPG65_05380) - 1143040..1143201 (-) 162 WP_180370962.1 lysozyme -
  MPG65_RS05385 (MPG65_05385) - 1143221..1143466 (-) 246 WP_245071698.1 lysozyme -
  MPG65_RS05390 (MPG65_05390) - 1143516..1143680 (-) 165 WP_245071700.1 lysozyme -
  MPG65_RS05395 (MPG65_05395) - 1143720..1144280 (-) 561 WP_245071702.1 DUF4670 domain-containing protein -
  MPG65_RS05400 (MPG65_05400) - 1144264..1144602 (-) 339 WP_000699911.1 hypothetical protein -
  MPG65_RS05405 (MPG65_05405) - 1144792..1145150 (-) 359 Protein_1050 tetratricopeptide repeat protein -
  MPG65_RS05410 (MPG65_05410) dprB 1145282..1145686 (-) 405 WP_245071704.1 Holliday junction resolvase RuvX Machinery gene
  MPG65_RS05415 (MPG65_05415) dprA 1145683..1146483 (-) 801 WP_245071706.1 DNA-processing protein DprA Machinery gene
  MPG65_RS05420 (MPG65_05420) minE 1146495..1146728 (-) 234 WP_180507922.1 cell division topological specificity factor MinE -
  MPG65_RS05425 (MPG65_05425) minD 1146725..1147531 (-) 807 WP_245071708.1 septum site-determining protein MinD -
  MPG65_RS05430 (MPG65_05430) ilvC 1147550..1148542 (-) 993 WP_245071710.1 ketol-acid reductoisomerase -
  MPG65_RS05440 (MPG65_05440) - 1148790..1149572 (+) 783 WP_245071712.1 NAD+ synthase -
  MPG65_RS05445 (MPG65_05445) - 1149569..1150507 (+) 939 WP_245071714.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15309.90 Da        Isoelectric Point: 9.7522

>NTDB_id=666900 MPG65_RS05410 WP_245071704.1 1145282..1145686(-) (dprB) [Helicobacter pylori strain Hpfe076]
MILACDVGLKRIGIAMLLNGVVLPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYTDTNARIEYFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=666900 MPG65_RS05410 WP_245071704.1 1145282..1145686(-) (dprB) [Helicobacter pylori strain Hpfe076]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTATGCTTTTGAACGGCGTTGTCTTACCTTTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAACGAAAGCTATACGGACACGAACGCGCGCATTGAATATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTAAAAAAGC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

93.939

98.507

0.925