Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   OG782_RS11835 Genome accession   NZ_CP108800
Coordinates   2697125..2698423 (-) Length   432 a.a.
NCBI ID   WP_406450066.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00876     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2692125..2703423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG782_RS11810 (OG782_11820) ndk 2693100..2693513 (-) 414 WP_406450056.1 nucleoside-diphosphate kinase -
  OG782_RS11815 (OG782_11825) - 2693618..2693974 (-) 357 WP_406450058.1 DUF4233 domain-containing protein -
  OG782_RS11820 (OG782_11830) - 2693980..2695503 (-) 1524 WP_406450060.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  OG782_RS11825 (OG782_11835) - 2695810..2695959 (-) 150 WP_406450062.1 hypothetical protein -
  OG782_RS11830 (OG782_11840) - 2696093..2697052 (+) 960 WP_406450064.1 hypothetical protein -
  OG782_RS11835 (OG782_11845) clpX 2697125..2698423 (-) 1299 WP_406450066.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG782_RS11840 (OG782_11850) clpP 2698581..2699264 (-) 684 WP_406450068.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG782_RS11845 (OG782_11855) - 2699345..2699950 (-) 606 WP_352121848.1 ATP-dependent Clp protease proteolytic subunit -
  OG782_RS11850 (OG782_11860) tig 2700216..2701622 (-) 1407 WP_406450070.1 trigger factor -
  OG782_RS11865 (OG782_11875) - 2702220..2702414 (-) 195 WP_136325240.1 hypothetical protein -

Sequence

Protein


Download         Length: 432 a.a.        Molecular weight: 47364.15 Da        Isoelectric Point: 4.8335

>NTDB_id=666874 OG782_RS11835 WP_406450066.1 2697125..2698423(-) (clpX) [Streptomyces sp. NBC_00876]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQEP
AKKALSVAVYNHYKRVQAGENGGGSSRDDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFSGLEKIIESRAGAKGIGFGATIRSKREIQASDQFQEVMPEDLVKFGMIPEFIGRLPVLTSVHNLDR
EALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLQSVMYEVPSRKDVARVVIT
ADVVRNNVNPTLVPREPRTIGKGDDGRHEKSA

Nucleotide


Download         Length: 1299 bp        

>NTDB_id=666874 OG782_RS11835 WP_406450066.1 2697125..2698423(-) (clpX) [Streptomyces sp. NBC_00876]
GTGGCACGCATCGGTGATGGCGGCGACCTGCTCAAGTGCTCGTTCTGCGGAAAGAGCCAGAAGCAGGTGAAGAAGCTCAT
CGCGGGACCCGGTGTGTACATCTGCGACGAGTGCATCGATCTCTGCAACGAGATCATCGAGGAGGAGCTCGCCGAGACCT
CCGAAGTGCGGTGGGAGGAACTCCCCAAACCGCGCGAGATCTACGAGTTCCTCGAGGGGTACGTCGTCGGGCAGGAGCCC
GCGAAGAAGGCCCTCTCGGTCGCTGTGTACAACCACTACAAGCGGGTCCAGGCCGGTGAGAACGGCGGCGGTTCCAGCCG
CGACGACGCGATCGAACTCGCCAAGTCCAACATCCTGCTGCTGGGCCCCACGGGCTCCGGCAAGACGCTCCTCGCGCAGA
CGCTGGCCCGCATGCTCAACGTCCCGTTCGCCATCGCGGACGCGACGGCGCTGACGGAGGCCGGCTATGTCGGCGAGGAC
GTCGAGAACATCCTGCTGAAGCTGATCCAGGCCGCTGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCCCGCAAGAGCGAGAACCCGTCGATCACCCGCGATGTCTCCGGCGAGGGCGTCCAGCAGGCCC
TGTTGAAGATCCTGGAGGGCACCACCGCCTCCGTGCCGCCGCAGGGCGGCCGCAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTGCTGTTCATCGTGGGCGGCGCCTTCTCCGGACTCGAGAAGATCATCGAGTCCCGGGCCGGTGC
CAAGGGCATCGGCTTCGGCGCCACGATCCGCTCCAAGCGGGAGATCCAGGCGAGCGACCAGTTCCAAGAGGTCATGCCGG
AGGATCTGGTGAAGTTCGGGATGATCCCCGAGTTCATCGGCCGCCTCCCGGTCCTGACCTCGGTCCACAACCTGGACCGC
GAGGCCCTGCTCCAGATCCTCATCGAGCCGCGCAACGCCCTGGTGAAGCAGTACCAGCGGCTGTTCGAACTCGACGGCGT
GGAGCTGGACTTCGAGCGCGAGGCGCTGGAGGCCATCGCCGACCAGGCGATCCTGCGTCAGACCGGCGCGCGCGGTCTGC
GCGCCATCATGGAGGAGGTCCTCCAGTCGGTGATGTACGAGGTGCCGTCCCGCAAGGACGTCGCCCGGGTCGTCATCACG
GCGGACGTGGTCCGCAACAACGTCAACCCGACCCTGGTCCCGCGCGAGCCGCGGACGATCGGCAAGGGCGACGACGGGCG
GCACGAGAAGTCGGCGTAG

Domains

Predicted by InterProScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(318-395)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-48)

AAA domain (Cdc48 subfamily) (AAA_2)

(115-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

63.93

93.056

0.595
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.126

95.37

0.516