Detailed information NTG0666771

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG47_RS00690
• Genome accession: NZ_CP094095
• Coordinates: 151274..152239 (+)
• Length: 321 a.a.
• NCBI ID: WP_245016232.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe083
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 146274..157239

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG47_RS00660 (MPG47_00660)	panD	147687..148037 (+)	351	WP_245016231.1	aspartate 1-decarboxylase	-
MPG47_RS00665 (MPG47_00665)	-	148048..148341 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
MPG47_RS00670 (MPG47_00670)	-	148341..149336 (+)	996	WP_245016555.1	PDZ domain-containing protein	-
MPG47_RS00675 (MPG47_00675)	comB6	149344..150399 (+)	1056	WP_245016556.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG47_RS00680 (MPG47_00680)	comB7	150415..150540 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
MPG47_RS00685 (MPG47_00685)	comB8	150537..151274 (+)	738	WP_180426496.1	virB8 family protein	Machinery gene
MPG47_RS00690 (MPG47_00690)	comB9	151274..152239 (+)	966	WP_245016232.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG47_RS00695 (MPG47_00695)	comB10	152232..153368 (+)	1137	WP_245016233.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG47_RS00700 (MPG47_00700)	-	153438..154850 (+)	1413	WP_245016234.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG47_RS00705 (MPG47_00705)	gmd	154864..156009 (+)	1146	WP_245016235.1	GDP-mannose 4,6-dehydratase	-
MPG47_RS00710 (MPG47_00710)	-	156002..156934 (+)	933	WP_245016236.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 321 a.a.
• Molecular weight: 36914.54 Da
• Isoelectric Point: 9.6404

>NTDB_id=666771 MPG47_RS00690 WP_245016232.1 151274..152239(+) (comB9) [Helicobacter pylori strain Hpfe083]
MRKVLYALVGFLLAFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLEKAPTNNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKS
KLSLMPKEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKD
E

Nucleotide

• Length: 966 bp

>NTDB_id=666771 MPG47_RS00690 WP_245016232.1 151274..152239(+) (comB9) [Helicobacter pylori strain Hpfe083]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAAGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTACTCATCAAGCCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCACAAAACAAAGAAAATACCCTTGAAAAGGCCCCCACAAACAACAACAAACCCTT
AAAAGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAAAATCGTTAAAA
AAGACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCC
AAACTCTCTTTGATGCCTAAAGAAATTTTCAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTC
TAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCG
CTGAAGATGTCTCGGCTAAATGGACTTTAAGGTTGGGCAAGGACTATCTGTGTATCCGTTTTATCAAAAAGGGTAAAGAT
GAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.945	100	0.944