Detailed information NTG0666768

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: MPG47_RS00675
• Genome accession: NZ_CP094095
• Coordinates: 149344..150399 (+)
• Length: 351 a.a.
• NCBI ID: WP_245016556.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe083
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 144344..155399

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG47_RS00645 (MPG47_00645)	-	144767..145180 (+)	414	WP_001023005.1	universal stress protein	-
MPG47_RS00650 (MPG47_00650)	-	145200..145475 (+)	276	WP_000784960.1	ATP-dependent Clp protease adaptor ClpS	-
MPG47_RS00655 (MPG47_00655)	-	145475..147697 (+)	2223	WP_245016230.1	ATP-dependent Clp protease ATP-binding subunit	-
MPG47_RS00660 (MPG47_00660)	panD	147687..148037 (+)	351	WP_245016231.1	aspartate 1-decarboxylase	-
MPG47_RS00665 (MPG47_00665)	-	148048..148341 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
MPG47_RS00670 (MPG47_00670)	-	148341..149336 (+)	996	WP_245016555.1	PDZ domain-containing protein	-
MPG47_RS00675 (MPG47_00675)	comB6	149344..150399 (+)	1056	WP_245016556.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG47_RS00680 (MPG47_00680)	comB7	150415..150540 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
MPG47_RS00685 (MPG47_00685)	comB8	150537..151274 (+)	738	WP_180426496.1	virB8 family protein	Machinery gene
MPG47_RS00690 (MPG47_00690)	comB9	151274..152239 (+)	966	WP_245016232.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG47_RS00695 (MPG47_00695)	comB10	152232..153368 (+)	1137	WP_245016233.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG47_RS00700 (MPG47_00700)	-	153438..154850 (+)	1413	WP_245016234.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39781.79 Da
• Isoelectric Point: 9.0419

>NTDB_id=666768 MPG47_RS00675 WP_245016556.1 149344..150399(+) (comB6) [Helicobacter pylori strain Hpfe083]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNGVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIGAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPVSSSVSSSMRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=666768 MPG47_RS00675 WP_245016556.1 149344..150399(+) (comB6) [Helicobacter pylori strain Hpfe083]
ATGAAAAATGACGCTTATGAAATTATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATGGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGTGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCACTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTGAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGGCGCACATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTATTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGTGCCAACCTTAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGTTTCTTCTAGCGTTTCTTCTTCTATGAGAGAAAGCGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	97.151	100	0.972