Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   OG806_RS41095 Genome accession   NZ_CP108797
Coordinates   9053063..9055138 (-) Length   691 a.a.
NCBI ID   WP_406395936.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00882     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 9048063..9060138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG806_RS41080 (OG806_41005) opcA 9049434..9050369 (-) 936 WP_406162178.1 glucose-6-phosphate dehydrogenase assembly protein OpcA -
  OG806_RS41085 (OG806_41010) zwf 9050366..9051901 (-) 1536 WP_406162180.1 glucose-6-phosphate dehydrogenase -
  OG806_RS41090 (OG806_41015) tal 9051898..9053043 (-) 1146 WP_406162182.1 transaldolase -
  OG806_RS41095 (OG806_41020) recP/tkt 9053063..9055138 (-) 2076 WP_406395936.1 transketolase Machinery gene
  OG806_RS41100 (OG806_41025) - 9055285..9056199 (+) 915 WP_406162184.1 AraC family transcriptional regulator -
  OG806_RS41105 (OG806_41030) - 9056211..9056597 (+) 387 WP_406162185.1 VOC family protein -
  OG806_RS41110 (OG806_41035) - 9056789..9057679 (+) 891 WP_328642014.1 alkaline phosphatase family protein -
  OG806_RS41115 (OG806_41040) - 9057685..9058995 (+) 1311 WP_406162186.1 MFS transporter -
  OG806_RS41120 (OG806_41045) - 9058992..9060014 (+) 1023 WP_406162188.1 TolB family protein -

Sequence

Protein


Download         Length: 691 a.a.        Molecular weight: 73991.51 Da        Isoelectric Point: 4.8181

>NTDB_id=666768 OG806_RS41095 WP_406395936.1 9053063..9055138(-) (recP/tkt) [Streptomyces sp. NBC_00882]
MSTQTPDSFEWTELDRRAVDTARLLAADAVQQVGNGHPGTAMALAPAAYTIFQKVMRHDPADPEWTGRDRFVLSPGHTSL
TLYTQLYLSGYELELDDLKAFRTHGSKTPGHPEYGHTAGVETTTGPLGQGVANAVGMAMAARYERGLFDPEAPEGESPFD
HTIWAIVSDGDLEEGISAEASSLAGHQKLGNLVFVYDDNHISIEGDTATAFSEDVLKRYEAYGWHTQRIEPGADGDIDVP
ALYAALKSAQAETARPSIIAMRTIIAWPAPNAQNTEAAHGSALGADEVAATKRVLGFDPARTFEVADEVLAHSRKALDRG
ADAHAAWDKQISVWRGEQPERAQLFDRIVAGQLPEGWESAIPVFEGGTSVATRAASGKVLQALGAVLPELWGGSADLAGS
NNTTIDKSSSFLPKGNPLPEADPYGRTVHFGIREHSMAAEMNGIALHGNTRIYGGTFLVFSDYMRNAVRLSALMQLPVTY
VWTHDSIGLGEDGPTHQPVEHLASLRAIPGLNIVRPADANETATAWAEILRRHATDPAPHGLALTRQGVPTYAPNPDAAK
GGYVLVESSGETPDVVLIATGSEVQLAVAARERLEAEGVGTRVVSMPSVEWFEQQPREYRESVLPPSVRARVAIEAGIGL
TWYRFVGDAGRIVSLEHFGASADAKTLFAEYGFTAENVAAAARESVAAARG

Nucleotide


Download         Length: 2076 bp        

>NTDB_id=666768 OG806_RS41095 WP_406395936.1 9053063..9055138(-) (recP/tkt) [Streptomyces sp. NBC_00882]
ATGAGCACGCAGACACCGGACAGCTTCGAATGGACCGAACTCGACCGGCGTGCCGTCGACACCGCCCGCCTCTTGGCGGC
GGATGCCGTGCAGCAGGTCGGGAACGGCCACCCCGGCACCGCGATGGCCCTGGCCCCCGCGGCGTACACGATCTTTCAGA
AGGTGATGCGTCACGACCCGGCGGATCCCGAGTGGACCGGGCGCGACCGCTTCGTCCTCTCCCCCGGCCACACCTCGCTG
ACGCTGTACACCCAGCTCTACCTCTCCGGGTACGAGCTGGAGCTGGACGACCTGAAGGCCTTCCGGACCCACGGCTCCAA
GACGCCCGGTCACCCCGAGTACGGGCACACGGCAGGAGTGGAGACGACCACCGGTCCGCTCGGGCAGGGTGTCGCCAACG
CCGTCGGCATGGCGATGGCCGCCCGCTACGAGCGCGGCCTCTTCGACCCCGAGGCCCCCGAGGGCGAGTCCCCCTTCGAC
CACACCATCTGGGCGATCGTCTCCGACGGCGACCTGGAGGAGGGCATCTCCGCCGAGGCCTCCTCGCTCGCGGGCCACCA
GAAGCTCGGCAACCTGGTCTTCGTCTACGACGACAACCACATCTCCATCGAGGGCGACACGGCGACCGCGTTCTCCGAGG
ACGTGCTGAAGCGGTACGAGGCCTACGGCTGGCACACCCAGCGCATCGAGCCCGGCGCCGACGGCGACATCGACGTACCC
GCCCTGTACGCGGCACTGAAGTCCGCGCAGGCCGAGACCGCGCGGCCCTCGATCATCGCGATGCGCACGATCATCGCCTG
GCCCGCCCCGAACGCCCAGAACACCGAGGCCGCCCACGGCTCCGCACTCGGCGCCGACGAGGTCGCCGCCACCAAGCGGG
TCCTCGGCTTCGACCCCGCGCGCACCTTCGAGGTCGCCGACGAGGTGCTGGCCCACTCCCGCAAGGCCCTCGACCGGGGC
GCCGATGCACACGCCGCCTGGGACAAGCAGATCTCCGTATGGCGCGGTGAGCAGCCCGAGCGGGCCCAGCTCTTCGACCG
GATCGTCGCCGGGCAGCTCCCCGAGGGCTGGGAGTCCGCAATCCCGGTCTTCGAGGGGGGCACGTCCGTCGCCACCCGTG
CCGCCTCCGGCAAGGTGCTCCAGGCCCTCGGCGCGGTGCTCCCCGAGCTCTGGGGCGGTTCCGCCGACCTCGCCGGCTCG
AACAACACGACCATCGACAAGTCGAGCTCCTTCCTGCCGAAGGGCAACCCGCTGCCGGAGGCCGACCCCTACGGCCGTAC
GGTCCACTTCGGCATCCGCGAGCACTCCATGGCCGCGGAGATGAACGGCATCGCGCTGCACGGCAACACGCGGATCTACG
GCGGCACCTTCCTGGTGTTCTCCGACTACATGCGCAACGCCGTACGCCTGTCCGCGCTGATGCAGCTGCCCGTCACCTAC
GTCTGGACGCACGACTCCATCGGCCTCGGCGAGGACGGCCCCACGCACCAGCCGGTCGAGCACCTCGCGTCGCTGCGCGC
CATCCCGGGCCTGAACATCGTCCGCCCGGCCGACGCCAACGAGACCGCGACCGCCTGGGCCGAGATCCTCCGCCGGCACG
CCACCGACCCGGCCCCGCACGGCCTCGCGCTCACCCGCCAGGGTGTGCCGACGTACGCGCCGAACCCGGACGCGGCCAAG
GGCGGGTACGTCCTCGTCGAATCGTCCGGGGAGACGCCCGACGTCGTCCTCATCGCCACCGGCTCCGAGGTCCAGCTCGC
CGTCGCCGCGCGGGAGCGGCTGGAGGCCGAGGGGGTCGGTACCCGGGTGGTGTCGATGCCGTCCGTGGAGTGGTTCGAGC
AGCAGCCTCGGGAGTACCGGGAGAGCGTCCTTCCGCCGTCCGTGCGAGCCCGTGTCGCGATCGAGGCCGGTATCGGTCTC
ACGTGGTACCGCTTCGTAGGTGACGCAGGACGCATCGTCTCCCTCGAGCACTTCGGCGCCTCCGCCGACGCGAAGACCCT
GTTCGCCGAGTACGGCTTCACCGCCGAGAACGTCGCCGCCGCAGCCCGGGAATCCGTGGCCGCCGCGCGCGGTTGA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(570-678)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(15-354)

Transketolase, pyrimidine binding domain (Transket_pyr)

(369-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

46.086

97.974

0.452