Detailed information NTG0666710

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG82_RS00735
• Genome accession: NZ_CP094092
• Coordinates: 152998..153960 (+)
• Length: 320 a.a.
• NCBI ID: WP_245082766.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe086
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 147998..158960

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG82_RS00705 (MPG82_00705)	panD	149417..149767 (+)	351	WP_245082763.1	aspartate 1-decarboxylase	-
MPG82_RS00710 (MPG82_00710)	-	149778..150071 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
MPG82_RS00715 (MPG82_00715)	-	150071..151066 (+)	996	WP_245083601.1	PDZ domain-containing protein	-
MPG82_RS00720 (MPG82_00720)	comB6	151074..152129 (+)	1056	WP_245083602.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG82_RS00725 (MPG82_00725)	comB7	152145..152258 (+)	114	WP_001218100.1	hypothetical protein	Machinery gene
MPG82_RS00730 (MPG82_00730)	comB8	152255..152998 (+)	744	WP_000660524.1	virB8 family protein	Machinery gene
MPG82_RS00735 (MPG82_00735)	comB9	152998..153960 (+)	963	WP_245082766.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG82_RS00740 (MPG82_00740)	comB10	153953..155089 (+)	1137	WP_245082769.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG82_RS00745 (MPG82_00745)	-	155159..156571 (+)	1413	WP_245082773.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG82_RS00750 (MPG82_00750)	gmd	156585..157730 (+)	1146	WP_245082798.1	GDP-mannose 4,6-dehydratase	-
MPG82_RS00755 (MPG82_00755)	-	157723..158655 (+)	933	WP_245082800.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36921.49 Da
• Isoelectric Point: 9.4678

>NTDB_id=666710 MPG82_RS00735 WP_245082766.1 152998..153960(+) (comB9) [Helicobacter pylori strain Hpfe086]
MRKVLYALVGFLLVFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSRHPNLQVFIEDKN
YYSNAFMKPQNKENTFEKALTNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQRGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=666710 MPG82_RS00735 WP_245082766.1 152998..153960(+) (comB9) [Helicobacter pylori strain Hpfe086]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGTTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAGAG
TAACGATCGCATTTTACTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAGACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCACAAAACAAAGAAAATACCTTTGAAAAGGCCCTCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACGATTGGCGATAACACTAATGCAATGAAAATCGTTAAAAAGG
ACATTCAAAGAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTCAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCCAA
ATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCGCTG
AAGATGTCTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATCCGTTTTGTCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.025	100	0.938